Cnig009345.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294029.1:11913794-11915062[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.15 3.3e+02 2.4 0.1 22 52 116 146 104 148 0.77 2 11 2 4.4e+03 -1.3 0.0 22 48 144 170 141 176 0.75 3 11 1 2.2e+03 -0.3 0.0 21 44 171 194 167 199 0.77 4 11 0.029 63 4.6 0.0 21 47 199 225 181 230 0.85 5 11 0.047 1e+02 4.0 0.1 21 46 227 252 225 260 0.70 6 11 1.1 2.5e+03 -0.5 0.1 21 45 255 279 251 283 0.72 7 11 0.0027 5.9 7.9 0.2 21 46 283 308 279 313 0.90 8 11 0.009 20 6.3 0.2 22 47 312 337 308 342 0.88 9 11 1.2 2.7e+03 -0.6 0.0 27 49 344 366 337 369 0.84 10 11 0.00011 0.24 12.4 0.0 21 50 366 395 361 397 0.87 11 11 0.02 44 5.1 0.0 22 46 395 419 392 421 0.90
Sequence Information
- Coding Sequence
- ATGACAGAAGAAACGTCTGGAAAAGACGGAGACAGCTTAGCAACACAACTAAAAATGAACTTGCAATCTTCAGAAGAAATGGAATACAAGTTGGAGCCATACCATTTTATCAACATTAAAGAAGAACCATCTCTGTCTCTAGAACAAGAAGTTCAAACCCAAAGTTTAAATTCCGTTGATGTTAAGGAGCAATTCCTCATCAAGCCTGAAGTTAAACTGGAGGTAGAAGATCATGTCGTTTATATTAACGAAGACAATTCATTGATTCGAAAACGTCGTTCTGGGAACAATCGATTAGTGTTTACGATCTGCAAATCCaaatcaaaagaaaaatcaTCTTTAAAACTCCAGGCATTTATGTGCGAAGTTTGTGGTCTGAAACTTAGAAGCAAATCGAGCTTAAAAAGTCACTTgagaattcataccggcgaaaaaccattttcttGTGAATTTTGTGATAATAAATTCTCGGATAAAGGAAAACTGAATTTGCACCTcagaattcataccggcgaaaaaccatttatttgtaaagtttgtaaatttaagttttcGCGTAAAGGAAGTTTGACGAAGCATTTGAGAACTCATACGGGAGAAAAACCATACGGATGTCATATTTGCGGTCATAAGTTCGCATTAAACGTAAATTTGAAACAGCACTTAATAattcatacgggcgagaaaccgtttgcttgcgaaatttgcgattataaaagttCGCGAAGAGAAACTCTGAGCAGACACTTAAAAAAtcatacgggggaaaaaccaTTTGCCTGTAAATTGTGCGAATACAAATGTCTAACTGCCAAAAGACTAAACGttcatttaagaattcacaccggggaaaaaccaTTCGCCTGTGAGATTTGCGCATGTAAATTTTCGGAAATAGGAACTTTGCGCAGACACCTGCGAATACACGCAGGCGAAAAATCATTTGAATGCGAAATTTGTTGCTCGAAGTTTAGGCATCAATCTTCGTTGAAGAAGCACCTAAAACTCCACATGGGCGAAACATTTGAGTGTACAATTTGTGATAAAAAGTTTTCGCAAAAATCGTGTTTGAATGTACATTTAAAAATCCACAGCGGTGAAAAGCCGTTTGAGTGCGGGATTTGTAGCTCCAGCTTCTCACAAAAAGGTAACTTGCGGGATCACTTAAGAATTCACACGGGAGATAAACCGTTTGCCTGCGAAATATGTAGTACAAAATTTTCAcacaaatcaaatttaaatcagcatttgaaaattcataaaaaGTAG
- Protein Sequence
- MTEETSGKDGDSLATQLKMNLQSSEEMEYKLEPYHFINIKEEPSLSLEQEVQTQSLNSVDVKEQFLIKPEVKLEVEDHVVYINEDNSLIRKRRSGNNRLVFTICKSKSKEKSSLKLQAFMCEVCGLKLRSKSSLKSHLRIHTGEKPFSCEFCDNKFSDKGKLNLHLRIHTGEKPFICKVCKFKFSRKGSLTKHLRTHTGEKPYGCHICGHKFALNVNLKQHLIIHTGEKPFACEICDYKSSRRETLSRHLKNHTGEKPFACKLCEYKCLTAKRLNVHLRIHTGEKPFACEICACKFSEIGTLRRHLRIHAGEKSFECEICCSKFRHQSSLKKHLKLHMGETFECTICDKKFSQKSCLNVHLKIHSGEKPFECGICSSSFSQKGNLRDHLRIHTGDKPFACEICSTKFSHKSNLNQHLKIHKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271606;
- 90% Identity
- iTF_00271606;
- 80% Identity
- iTF_00271606;