Cnig013501.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294029.1:50502928-50504463[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 25 5.9 0.1 21 46 81 106 73 112 0.84 2 13 0.011 24 6.0 0.4 22 44 110 132 105 136 0.89 3 13 0.00023 0.5 11.4 0.0 21 52 137 168 133 169 0.86 4 13 0.16 3.5e+02 2.3 0.0 21 48 165 192 163 198 0.85 5 13 0.77 1.7e+03 0.1 0.1 21 47 193 219 190 226 0.71 6 13 0.14 3e+02 2.5 0.0 21 30 249 258 240 274 0.81 7 13 0.017 37 5.4 0.1 21 44 305 328 292 333 0.86 8 13 0.039 84 4.2 0.1 22 44 334 356 330 360 0.89 9 13 0.00081 1.8 9.6 0.0 21 47 361 387 357 394 0.87 10 13 2.3 5e+03 -1.4 0.1 21 32 389 400 385 416 0.68 11 13 0.0017 3.6 8.6 0.4 21 51 417 447 413 448 0.78 12 13 0.0066 14 6.7 0.1 20 52 444 476 441 478 0.87 13 13 0.015 32 5.6 0.4 23 45 475 497 469 500 0.88
Sequence Information
- Coding Sequence
- ATGATACGTTCATTACAGGAAACTCCAGCCAATTCCCAAATTAAGACAGAAGAAATAGAAATCAAGTTGGAAGATTTGCACCATGCCATCGACATTAAGGAGGAGCAGACTTCAGTTCTGGTAACCTCACCGAAGAGAGAGTGTAAACCGCAAACGAGTAGCAAAGCGTTTTCATGTAAGATTTGCGATTACAAATGTAATCGGAAAGGAATTTTCGAAACTCATTTACGAACTCACAGTGGAGAAAAACCGTTTATGTGTGAATTCTGTAATTATACCTGTGCACAGAAGCCAAGTCTAAAGAGGCATTTAACCACCCACACGGGCGACAAACCCTTTACCTGCGAAATATGTGCTTATCGATGTGCGCAAAGCGGCGATTTAAAATGCCATATAAGAACTCACACTGGTGAGAAGCCATTTACGTGTGAAATTTGCAACTATAAATTCGCAGATCGCAGCAACCTGAGAGGTCATTTGAAAATCCATACCGGCGAGAAGCCCTTCAAGTGCGGACTTTGCGATTTTCAATGCGCAGACGGTAGTAATTTAAAGAGTCACTTAAAGACtcacaccggggaaaaaccgtttgccTGTGAATTCTGCGATTATAAGTGTACACGCAAAGGAGTTTTGAGAGTTCACTTACGAACTCACACTGGTGAGAAACcgtttatttgtgaattttgcGATTTTAGCAGTGCGCACAAGCAAAGCTATAAATTGCATTTTCGGACtcacaccggggaaaaaccgttcacCTGTGAAATTTGCGATTACGAATGTGCTCACAAAGGAAGTTTAATGATTCACTTAAAAACCCATACAGGGGAAAAATTATTCGAGTGTGAAAGTTGCGACTATAAAAGTGCGCATAAAGGAAGTTTAGAAACTCACGtaagaactcatactggcgagaaaccgtatatATGTGAATTTTGTGACTACGCATGCGCACAGAAGACTAGTCTAAAGAGACATTTGTTGACTCATAGCGGGGACAAACCGTTTACTTGTGAATTTTGTGACTATACTTGTGCGCAGAAGCCAAGTTTAAAGAGGCATATGATGACTCATACAGGTGAGAAGCCGTTCGCATGCGAAATTTGCGAATTCAAATGTACACAaagcgaaaattttaaaaatcacttaagaactcataccggggaaaaaccgttcggGTGTTCGGTTTGTGCCTACAAATGTGCTACCAAAGGAAGTTTgaatattcatttaaaaatccatACAGGCGAGAGACCGTTCACGTGTGGtgtttgtgactataaatgcgCACGTAAAGAAGTCCTGAGGAGACATTTAAGAACCCACAATGCCGAAAAACCGTTCACTTGTGAAATATGCGGCTACAAATGTACAGAAAATGGGAATTTCACCAGCCATTTAAGAACTCATGCCGGTGCCAAACCTTTCGCTTGTGAAATATGTGAATTTAAATGTGCgcgcaaagaaaatttaaaaagacatCTCAGAAGTCACTCGGGCCAGAACCAGAGTACGGGTGAAATTGATGGGTAA
- Protein Sequence
- MIRSLQETPANSQIKTEEIEIKLEDLHHAIDIKEEQTSVLVTSPKRECKPQTSSKAFSCKICDYKCNRKGIFETHLRTHSGEKPFMCEFCNYTCAQKPSLKRHLTTHTGDKPFTCEICAYRCAQSGDLKCHIRTHTGEKPFTCEICNYKFADRSNLRGHLKIHTGEKPFKCGLCDFQCADGSNLKSHLKTHTGEKPFACEFCDYKCTRKGVLRVHLRTHTGEKPFICEFCDFSSAHKQSYKLHFRTHTGEKPFTCEICDYECAHKGSLMIHLKTHTGEKLFECESCDYKSAHKGSLETHVRTHTGEKPYICEFCDYACAQKTSLKRHLLTHSGDKPFTCEFCDYTCAQKPSLKRHMMTHTGEKPFACEICEFKCTQSENFKNHLRTHTGEKPFGCSVCAYKCATKGSLNIHLKIHTGERPFTCGVCDYKCARKEVLRRHLRTHNAEKPFTCEICGYKCTENGNFTSHLRTHAGAKPFACEICEFKCARKENLKRHLRSHSGQNQSTGEIDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271555;
- 90% Identity
- iTF_00271555;
- 80% Identity
- iTF_00271555;