Cnig009380.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294029.1:12103385-12104683[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.2 4.3e+02 2.0 0.1 21 46 120 145 112 151 0.84 2 10 0.032 70 4.5 0.0 21 46 148 173 144 180 0.85 3 10 0.0037 8 7.5 0.0 23 45 178 200 172 203 0.88 4 10 0.00021 0.46 11.5 0.3 21 45 204 228 200 236 0.86 5 10 0.057 1.2e+02 3.7 0.4 21 44 260 283 252 291 0.85 6 10 0.14 3e+02 2.5 0.0 21 45 288 312 285 318 0.89 7 10 2.5 5.5e+03 -1.6 0.0 22 45 317 340 298 349 0.77 8 10 0.039 86 4.2 0.2 21 46 344 369 336 375 0.80 9 10 0.0033 7.1 7.7 0.0 21 51 372 402 368 403 0.87 10 10 4.7e-06 0.01 16.8 0.6 22 45 401 424 398 431 0.87
Sequence Information
- Coding Sequence
- atgattaaagtGGAACCTTGGGATGAATtcgaagaaaataaacaaattttatgcgtTTCCCAAGACGGAAATGATCCCAACTGTAATATTGACATTAAGACCGAAGCAAAAGAAGGTAACGATAGTGGATATTACTCGATCACCATTAAAGAAGAAATTGAACCGCTGGAAGATGAATTTTACGATGAATTGACAACAGAAATAAAACCAAACATTTTTGCGTGCGCATTAACTGTCCCAAATAACTTACAGGCGGAATCAATTCATACAACCGACAGATTATTATTTGCATGTGAATTTTGTAACTCCAGGTTTTCGATTAAATCTCAATTGGAAAGGCATTTGAGAACccatactggcgaaaaacctTTCATATGCGAATTTTGTACCTCAAAATTTTCAGAACGCAGAATCTTGCAGGAGCATCTCAGGACCCATACTGGTGAGAAGCCGTTTTTGTGCAAAGTTTGCGACCTGAAATTTTCCCAAAAAGGCAACTTGCATGCGCATTTAAGAACTCACTCCGGATTGAAACCGTTCGACTGCGATACGTGTGATgccaaattttcacaaaaaggAAATTTGCAAAGGCACTTGAGGACACATACAGGTGAGAAACCTTATTCTTGTAAAATTTGTCACCAAACGTTTCGAGAAAACAGAAGTTTGCAAGGTCACTTACGAAGTCACACCGGTGAAAAACCATTCGAGTGCGTACTTTGCGACTTTAAATGTTCCTATAAGTTAAGCTTGCAGACCCATCTGAGGACGCATACAGGTGAAAAACCACACGCTTGTTCGCTATGCGAGTTCAAGTGTTCACATAAGGTTAGCCTGCGGAGACACATACTAACCCAtactggtgaaaaaccatttatgtGTGAAGTATGCAAACTGAAATTTTCTCAAAAGGGACACATGCAACGTCATATGAGAACCCACACGGGCGAAAAACTGATCGAATGCAAATTTTGCAATGCAAAAGTCTTGGACAAAAGAATCATGGAAGAACACATACGAACTCATACAGGGGAAAAACCTTTCTCGTGCGACTTTTGCGATTTTAAGTGCTCGCACAGGCAAAGTATGCGACGACATCTGAGAACTCATACAGGTGAAAAACCGTTTGCGTGCCGGGtttgcaatttcaaattttcacaaaaagaTACTTTGCGTGAACATTTGAATATTCATACGGGAGATAAGCCGTACACATGCGGAATTTGTGGCTTTAAGTGCTCACAGAAAAGAAATCTACGAAGACACGTTAGACATCACATGGTAACATCACCGTGTTag
- Protein Sequence
- MIKVEPWDEFEENKQILCVSQDGNDPNCNIDIKTEAKEGNDSGYYSITIKEEIEPLEDEFYDELTTEIKPNIFACALTVPNNLQAESIHTTDRLLFACEFCNSRFSIKSQLERHLRTHTGEKPFICEFCTSKFSERRILQEHLRTHTGEKPFLCKVCDLKFSQKGNLHAHLRTHSGLKPFDCDTCDAKFSQKGNLQRHLRTHTGEKPYSCKICHQTFRENRSLQGHLRSHTGEKPFECVLCDFKCSYKLSLQTHLRTHTGEKPHACSLCEFKCSHKVSLRRHILTHTGEKPFMCEVCKLKFSQKGHMQRHMRTHTGEKLIECKFCNAKVLDKRIMEEHIRTHTGEKPFSCDFCDFKCSHRQSMRRHLRTHTGEKPFACRVCNFKFSQKDTLREHLNIHTGDKPYTCGICGFKCSQKRNLRRHVRHHMVTSPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271686;
- 90% Identity
- iTF_01292454;
- 80% Identity
- iTF_00271686;