Basic Information

Insect: Cantharis nigra
Gene Symbol: -
Assembly: GCA_958510845.1
Location: OY294029.1:42395951-42397807[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0014 0.073 14.4 0.1 2 23 58 79 57 79 0.97

2 18 0.0069 0.36 12.2 0.8 1 23 85 107 85 107 0.97

3 18 0.053 2.8 9.4 0.3 1 23 113 136 113 136 0.96

4 18 3.1e-05 0.0016 19.6 2.6 2 23 143 164 142 164 0.97

5 18 0.00086 0.045 15.0 5.4 1 23 170 192 170 192 0.98

6 18 0.078 4.1 8.9 0.3 3 23 200 221 198 221 0.96

7 18 0.00026 0.014 16.7 4.3 1 23 227 249 227 249 0.99

8 18 4.1e-06 0.00022 22.3 3.2 1 23 255 277 255 277 0.98

9 18 0.022 1.2 10.6 1.6 1 23 283 306 283 306 0.97

10 18 0.021 1.1 10.7 0.4 1 23 312 335 312 335 0.96

11 18 0.001 0.053 14.8 1.2 1 23 341 363 341 363 0.97

12 18 6.6e-05 0.0035 18.6 2.8 1 23 369 391 369 391 0.97

13 18 0.00035 0.018 16.3 1.0 1 23 397 420 397 420 0.97

14 18 0.00024 0.013 16.8 3.7 1 23 426 448 426 448 0.98

15 18 0.00095 0.049 14.9 4.5 1 23 454 476 454 476 0.98

16 18 0.00026 0.014 16.7 2.9 1 23 482 504 482 504 0.98

17 18 0.013 0.68 11.3 2.3 1 23 510 533 510 533 0.93

18 18 0.01 0.54 11.6 3.9 2 23 540 561 539 562 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0014	0.073	14.4	0.1	2	23	58	79	57	79	0.97
2	18	0.0069	0.36	12.2	0.8	1	23	85	107	85	107	0.97
3	18	0.053	2.8	9.4	0.3	1	23	113	136	113	136	0.96
4	18	3.1e-05	0.0016	19.6	2.6	2	23	143	164	142	164	0.97
5	18	0.00086	0.045	15.0	5.4	1	23	170	192	170	192	0.98
6	18	0.078	4.1	8.9	0.3	3	23	200	221	198	221	0.96
7	18	0.00026	0.014	16.7	4.3	1	23	227	249	227	249	0.99
8	18	4.1e-06	0.00022	22.3	3.2	1	23	255	277	255	277	0.98
9	18	0.022	1.2	10.6	1.6	1	23	283	306	283	306	0.97
10	18	0.021	1.1	10.7	0.4	1	23	312	335	312	335	0.96
11	18	0.001	0.053	14.8	1.2	1	23	341	363	341	363	0.97
12	18	6.6e-05	0.0035	18.6	2.8	1	23	369	391	369	391	0.97
13	18	0.00035	0.018	16.3	1.0	1	23	397	420	397	420	0.97
14	18	0.00024	0.013	16.8	3.7	1	23	426	448	426	448	0.98
15	18	0.00095	0.049	14.9	4.5	1	23	454	476	454	476	0.98
16	18	0.00026	0.014	16.7	2.9	1	23	482	504	482	504	0.98
17	18	0.013	0.68	11.3	2.3	1	23	510	533	510	533	0.93
18	18	0.01	0.54	11.6	3.9	2	23	540	561	539	562	0.94

Sequence Information

Coding Sequence: ATGGATCAAATAGTATTTGTAAAGAAGTCTCAAAGTTTGGAAAAAAgtgagaattttgaaattaaaaaggaacCAGAAGATGCAACATTCAGCTACGAAGACTTGCATCACTCAATTGACATCAAAGAAGAAAACTCTCAACTAAATGAAGTACAATTTTATCAGAAATTAGAATGTGAAATATGCaagataaacttttttaatgAACCTCAACTGGCAAAACATTTAGAAACACATTCCGTCAAGAAATCATTTGCATGTGGAGTTTGTAGTTATAAAAGCTCTCGGAGAGGATATATGCAGGatcatttaaaaactcatacCGGAGAGCAGCCGTTTGCTTGCCAAATGTGTGACTATAAAGGTTCGCTGAAGCAAAAACTAAAGGAGCATATCATCAGGGGTCATACTAACCAGAAAACAATTTCGTGTCagatttgtgattataaatgttcatttGCTCAAGATTTGAAACGGCATATGAGAACTCACACAGGTGAGAAACTGTTTGCTTGTAAAGTGTGCGATCATAAGTGTTCGGTGAAACAAGATTTTCAACGACACATTAGAACTCACACCGGTGAGAAACCGTTTGGTTGTGAATTGTGCGACAATAAATATTCGGCTAGGCGCGAATTgaaattgcatattttgaagGTTCATTCTGGTGAGCAACCGTTTAAATGTGAAGTTTGTGAGTACAAATGTTCGGTGAAGCAACATTTAGTGATTCATATGCGGACTCACactggtgagaaaccattttcatgtgaaatttgtgagtataaattttcaaacagacATCAGTTGACAGGACACATGAGAACTCACACCGGAGAAAAGCCATTTTCTTGTGAATTTTGTGACTATAAAAGTTCATTTAAACAAGTATTGAAACAACATATCATGAAAATTCATaccggtgaaaaaccatttgcaTGTGATATGTGTGATTCTAAATTTACAATCAAACAGGTATTGAAACAgcatattttaagaattcatattggtgaaaaaatgtttgcttgtggaatttgtgattataaatgtgcaattaaacaatatttgGTAACGCATATGAGAACTCATTCTATGGACAAACCATTtgcatgtgaaatttgtgactacaAATGCTCAATCAAGGAATATTTGAGACGGCATATGAAAACTCATACAGGCATCAAACCGTTTGTCTGTGAACTTTGTGAATTGAAATTTTCGGTGAAGCATACACTGAATCAGCATATTTTAAGAGCTCATGCTGGCGAAAAGCCGTTTACTTGTCagatttgtgactataaatgttcaGTCAAGGAAGATTTGAAACGGCATTCGAGAAGTCATAACAGCGAGAAACAGTTTTCTTGCGATATTTGTGATTATAGATGTTATATGAAGCAACATTTGGTATCTCACATGAGAGTACATACCAGTGATAAACCTTTTGTGTGTAAATATTGTGATTATAGATGTTCACGAAAAGGACGTTTGATagatcatttaaaaattcattctaGTGATAAACCTTACGCATGTAATATGTGTGACTGTAGATTTTCATTCAAACGAGTACTCAAACAGCATGTTGTGAGAATTCATAACGACGAAAAAACGATTAAGTGTGAAATgtgtgactataaatgttcgATTAAACAAGATTTGAAACGGCATGTCAAAGCTCATCATAGCCAGAAAGAGGTCGGTGATTATGAAGCCAAGTGGGCACCGgttttaaatctaaattgtGAATCTTATTCTGTGTGTGTAAAGGACGAACCAACATATTCTGTAACTGTAACCGATCTTCCTATAAAAACAGAGACTTTAAGTTTCATAAAAGAAGAATTGGTTACGTAA
Protein Sequence: MDQIVFVKKSQSLEKSENFEIKKEPEDATFSYEDLHHSIDIKEENSQLNEVQFYQKLECEICKINFFNEPQLAKHLETHSVKKSFACGVCSYKSSRRGYMQDHLKTHTGEQPFACQMCDYKGSLKQKLKEHIIRGHTNQKTISCQICDYKCSFAQDLKRHMRTHTGEKLFACKVCDHKCSVKQDFQRHIRTHTGEKPFGCELCDNKYSARRELKLHILKVHSGEQPFKCEVCEYKCSVKQHLVIHMRTHTGEKPFSCEICEYKFSNRHQLTGHMRTHTGEKPFSCEFCDYKSSFKQVLKQHIMKIHTGEKPFACDMCDSKFTIKQVLKQHILRIHIGEKMFACGICDYKCAIKQYLVTHMRTHSMDKPFACEICDYKCSIKEYLRRHMKTHTGIKPFVCELCELKFSVKHTLNQHILRAHAGEKPFTCQICDYKCSVKEDLKRHSRSHNSEKQFSCDICDYRCYMKQHLVSHMRVHTSDKPFVCKYCDYRCSRKGRLIDHLKIHSSDKPYACNMCDCRFSFKRVLKQHVVRIHNDEKTIKCEMCDYKCSIKQDLKRHVKAHHSQKEVGDYEAKWAPVLNLNCESYSVCVKDEPTYSVTVTDLPIKTETLSFIKEELVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00268844; iTF_00270178;
90% Identity: iTF_00268844;
80% Identity: -