Basic Information

Insect: Cantharis nigra
Gene Symbol: -
Assembly: GCA_958510845.1
Location: OY294029.1:49464548-49468617[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.3e-05 0.00069 20.8 0.1 1 23 62 84 62 84 0.99

2 14 7.1e-05 0.0037 18.5 1.1 1 23 90 112 90 112 0.98

3 14 8.4e-07 4.4e-05 24.5 0.9 1 23 118 140 118 140 0.98

4 14 0.00013 0.0069 17.6 2.3 1 23 146 168 146 168 0.98

5 14 3.8e-05 0.002 19.3 1.9 1 23 174 196 174 196 0.98

6 14 2.3e-05 0.0012 20.0 2.1 1 23 202 224 202 224 0.98

7 14 0.0037 0.19 13.1 0.2 1 19 230 248 230 250 0.95

8 14 0.00081 0.042 15.1 3.1 1 23 296 318 296 318 0.99

9 14 1.2e-05 0.00063 20.9 2.5 1 23 324 346 324 346 0.98

10 14 5.8e-05 0.003 18.7 6.3 1 23 352 374 352 374 0.99

11 14 0.081 4.2 8.8 6.2 1 23 380 402 380 402 0.97

12 14 0.00075 0.039 15.2 1.4 3 23 410 430 408 430 0.98

13 14 0.015 0.81 11.1 5.2 1 23 436 459 436 459 0.95

14 14 9.7e-05 0.0051 18.0 0.5 1 23 465 487 465 487 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.3e-05	0.00069	20.8	0.1	1	23	62	84	62	84	0.99
2	14	7.1e-05	0.0037	18.5	1.1	1	23	90	112	90	112	0.98
3	14	8.4e-07	4.4e-05	24.5	0.9	1	23	118	140	118	140	0.98
4	14	0.00013	0.0069	17.6	2.3	1	23	146	168	146	168	0.98
5	14	3.8e-05	0.002	19.3	1.9	1	23	174	196	174	196	0.98
6	14	2.3e-05	0.0012	20.0	2.1	1	23	202	224	202	224	0.98
7	14	0.0037	0.19	13.1	0.2	1	19	230	248	230	250	0.95
8	14	0.00081	0.042	15.1	3.1	1	23	296	318	296	318	0.99
9	14	1.2e-05	0.00063	20.9	2.5	1	23	324	346	324	346	0.98
10	14	5.8e-05	0.003	18.7	6.3	1	23	352	374	352	374	0.99
11	14	0.081	4.2	8.8	6.2	1	23	380	402	380	402	0.97
12	14	0.00075	0.039	15.2	1.4	3	23	410	430	408	430	0.98
13	14	0.015	0.81	11.1	5.2	1	23	436	459	436	459	0.95
14	14	9.7e-05	0.0051	18.0	0.5	1	23	465	487	465	487	0.97

Sequence Information

Coding Sequence: ATGTCAAGTTTTTTACAGGAAACTTCATGTCAATCAAATGGCTTTCAAATTAagatagaagaagaagaaattgaatTCCAGTTGGAtgatttgcatcattccataGACATTAAAGAAGAGATTTCTATTCTAGAAACCCAACCGCCGGTTATCCATTTGAGAACTTTTGCTGGCGAGAAACTGTATACATGCGAAGTGTGTGGCTACATATCGGCAgttaaaggaaatttaaaaagacaTTTAAGAATCCATACTGGAGAGAAGCCGTTTATATGTGGAatatgtgattataaatgtgcacTGAAAGAGGCTTTAAAAAGTCATATGAGGACTCATAACAACGACAAATCGTTTACGTGTAAAATTTGCGGCTTCAAGTTTAGTCGTAGAGGTAACCTGGCAATGCATTTGTTAACTCACACGGACCAAAAGCCTTTCAATTGCGAACATTGTGACTATAAAGGTGCACGaaaggaatatttaaaaatccatttaagaactcatacggGAAACAAACCGTTTACATGTAAAATatgtgactataaatgtgcaCGTAGGGATGACTTACGGGTTCACTTAGAAAGTCATTCTGGCGAGAAGCAGTATTCATGTGATATTTGTGAATATAAATTTGTACACAAAAAAAGTATAATCCGGCATATGAGGATACATACTGGTGAGAAACCGTATGCCTGTaaaatttgcgattacaaaTGTACACAGCCGGGAATGCTGAATCTTCATGAAGCTCCGTGCTATTCCAGTAATTTTGCTCAAATTAAAATAGAAGAAGTAGAAATCAAGTtggaagatttgcatcattccattgacattaaGGAAGAAACCTCCATTCGAGAATACAAAGCAGAACCAAGCGGGAAGCCGTTTAAGTGTGGCATTTGTGATTTTCGAAGTGCATACAAGGGCTGTTTAAAAACCCATTTAAGAACTCATTCTGACGATAAGCCTTTTacgtgtgaaatttgtgactataaatgttcaCGTAAAGGAGATTTGACAATTCATTTGAGATATCATGCAGGCGAGAAACCCTAcacttgtaaaatttgtaattataaatgcgTACGTGAAGGCCATTTGAAAAGGCATTTGAaaactcataccggggaaaaaccgtttgcttGTGATTTTTGTGACTACAAATGTTCGGACACTTGTCGTCTGAAACAGCACGTAAGGACTCATACGGGGGGAAAACCGTTTGGTTGTAGTATTTGCGATCATAAATCTTCAACCAAACAGCAGTTGGTAGTACATATGAAAATTCATACAGGGGAAAAGTTGTTTGAGTGTAAATTTTGCGATCACAAATATTCCACCAAACATCTGCTGGTAGTTCACAATATGAGGAATCATACCGGAGAGAAACCGTTCGCCTGTGGAATCTGTAACTATAAAAGTGCAGTAAAATATGATCTGAAACGGCATATAAAAACGCATTTAACCAAAAAATCATTACAAGAATGA
Protein Sequence: MSSFLQETSCQSNGFQIKIEEEEIEFQLDDLHHSIDIKEEISILETQPPVIHLRTFAGEKLYTCEVCGYISAVKGNLKRHLRIHTGEKPFICGICDYKCALKEALKSHMRTHNNDKSFTCKICGFKFSRRGNLAMHLLTHTDQKPFNCEHCDYKGARKEYLKIHLRTHTGNKPFTCKICDYKCARRDDLRVHLESHSGEKQYSCDICEYKFVHKKSIIRHMRIHTGEKPYACKICDYKCTQPGMLNLHEAPCYSSNFAQIKIEEVEIKLEDLHHSIDIKEETSIREYKAEPSGKPFKCGICDFRSAYKGCLKTHLRTHSDDKPFTCEICDYKCSRKGDLTIHLRYHAGEKPYTCKICNYKCVREGHLKRHLKTHTGEKPFACDFCDYKCSDTCRLKQHVRTHTGGKPFGCSICDHKSSTKQQLVVHMKIHTGEKLFECKFCDHKYSTKHLLVVHNMRNHTGEKPFACGICNYKSAVKYDLKRHIKTHLTKKSLQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00268808;
90% Identity: -
80% Identity: -