Basic Information

Insect: Cantharis nigra
Gene Symbol: -
Assembly: GCA_958510845.1
Location: OY294029.1:49248686-49250245[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 3.3e-05 0.0018 19.5 2.6 1 23 43 65 43 65 0.99

2 17 4.8e-06 0.00025 22.1 2.6 1 23 71 93 71 93 0.98

3 17 9.9e-05 0.0052 18.0 2.2 1 23 99 121 99 121 0.98

4 17 1.6e-05 0.00085 20.5 2.9 1 23 127 149 127 149 0.98

5 17 3.6e-05 0.0019 19.4 3.8 1 23 155 177 155 177 0.99

6 17 0.00065 0.034 15.4 2.4 1 23 183 205 183 205 0.98

7 17 0.00031 0.016 16.5 1.0 1 23 211 233 211 233 0.99

8 17 0.0029 0.15 13.4 1.7 3 23 241 261 239 261 0.98

9 17 0.00032 0.017 16.4 0.8 1 23 267 289 267 289 0.97

10 17 6e-05 0.0032 18.7 2.9 1 23 295 317 295 317 0.99

11 17 4.1e-05 0.0022 19.2 0.9 1 23 323 345 323 345 0.99

12 17 0.00041 0.022 16.1 1.1 1 23 351 373 351 373 0.97

13 17 0.0029 0.15 13.4 5.9 1 23 379 401 379 401 0.98

14 17 0.0022 0.12 13.7 0.7 1 22 407 428 407 428 0.97

15 17 1.7 90 4.7 5.5 1 23 435 458 435 458 0.91

16 17 1.2e-05 0.00063 20.9 0.4 1 23 464 486 464 486 0.98

17 17 2.4e-05 0.0013 19.9 4.1 1 23 492 514 492 514 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	3.3e-05	0.0018	19.5	2.6	1	23	43	65	43	65	0.99
2	17	4.8e-06	0.00025	22.1	2.6	1	23	71	93	71	93	0.98
3	17	9.9e-05	0.0052	18.0	2.2	1	23	99	121	99	121	0.98
4	17	1.6e-05	0.00085	20.5	2.9	1	23	127	149	127	149	0.98
5	17	3.6e-05	0.0019	19.4	3.8	1	23	155	177	155	177	0.99
6	17	0.00065	0.034	15.4	2.4	1	23	183	205	183	205	0.98
7	17	0.00031	0.016	16.5	1.0	1	23	211	233	211	233	0.99
8	17	0.0029	0.15	13.4	1.7	3	23	241	261	239	261	0.98
9	17	0.00032	0.017	16.4	0.8	1	23	267	289	267	289	0.97
10	17	6e-05	0.0032	18.7	2.9	1	23	295	317	295	317	0.99
11	17	4.1e-05	0.0022	19.2	0.9	1	23	323	345	323	345	0.99
12	17	0.00041	0.022	16.1	1.1	1	23	351	373	351	373	0.97
13	17	0.0029	0.15	13.4	5.9	1	23	379	401	379	401	0.98
14	17	0.0022	0.12	13.7	0.7	1	22	407	428	407	428	0.97
15	17	1.7	90	4.7	5.5	1	23	435	458	435	458	0.91
16	17	1.2e-05	0.00063	20.9	0.4	1	23	464	486	464	486	0.98
17	17	2.4e-05	0.0013	19.9	4.1	1	23	492	514	492	514	0.99

Sequence Information

Coding Sequence: ATGAAGACGGAAGAAATTGAATTGAAATCggaagatttgcatcattccatcgatGTTAAAGAAGAGGCTTTGATTCTAAAATCGCAACCTGTTACAGAATATAAGCCGGAACCAAGCGCGAAACCCTTCAAGTGTGATCTTTGTGCGTATACATGCGCACaaaagggaaatttaaaaaatcatttaagaactcatacaggcgagaaaccgtatATGTGCGAAATTTGTGACTTTACATGTACACAACAAGGGAGTTTAAAAAACCACTTAAGAACTCACAgcggcgagaaaccgttcgcCTGTAAATTTTGTGATTATACCTGTGCGTACCAGGGAAGCCTGAcaattcatttaagaactcatactggaGAGAAACCATACATGTGTGAAGTTTGCCGGTTGAGATTTTCCCAAAAAGGACATTTAAAGGATCATTTAAAAACTCACACAGGTCTGAAACCGTTTCAGTGCGAAATTTGTGAATATAAATGCTCCCGGCAGTTTGATTTGAAGCTTCATTTACGAACCCActcgggggaaaaaccgtttaagTGTAGTATCTGTGACTACACTTGTGCTCAGAAAGGAAACTTAAAGTTTCACTTGGCAACTCACACAGGCCAAAAACCGTTTACGTGCGAATTTTGTGACTTTAAAGGTCGACGTAAAGGAGATTTAGTGagtcatttaagaactcataccggggaGAAGCCGTTTGGTTGCAAAGTTTGTGACTTCAAGTGTGCACGTAAAGgagatttaaaaattcattcgaGAATTCATTCAGGTCACAAACCCTTTAAATGCGAAATGTGTGACTATAGGTCTACGAGTAAAGCTACCTTAAATGTACATTTATTCGTtcatacgggggaaaaaccgtttgagtgtgaAGTTTGCGATTACAAGTGTGCACGACGGACAGACTTGAAAtatcatttaagaactcatactggcgacAAACCGTATAAATGCGAACTTTGCGACTTTAGAAGTGCACAGAGGAGCAGTTTAAAAATTCATGTAAGAACTCATACCGACGTGAAACCCTACACATGCgaattttgtgattataaatctgCAAGCAGaagtaacttaaaaattcaTGTGTACAGTCATACAGGCGAAAAACCCCATACGTGTCATATTTGTGACTACAAGTGTGCTAGGCAAATAGATTTAGATTATCATTTAAGAACCCATACTGGCGACAGACCGTTTACATGTGACCTGTGTAAGTCCAGATATGCACGTAAAGCTGATTTAAAGTATCATTTAAGAACCGGTATCGATGGAAAATCGTTTCTCTGTAAAATATGTAACTATGAATGTACACGGAAGTGCAGcataaaacttcattttttgAGTGTTCATACAGATGATAAACCATTTGCATGCGAAATTTGTGACTACAGGTATGCCCGgcaaattgatttaaaatatcacttacgaactcataccgggtACAAACCGTTtacatgtgaaatttgtgattataaatgtaccCGTAAAGGAGATCTCAAAAGTCATACGAAAACTCATTCGGATAGGACAATTTGA
Protein Sequence: MKTEEIELKSEDLHHSIDVKEEALILKSQPVTEYKPEPSAKPFKCDLCAYTCAQKGNLKNHLRTHTGEKPYMCEICDFTCTQQGSLKNHLRTHSGEKPFACKFCDYTCAYQGSLTIHLRTHTGEKPYMCEVCRLRFSQKGHLKDHLKTHTGLKPFQCEICEYKCSRQFDLKLHLRTHSGEKPFKCSICDYTCAQKGNLKFHLATHTGQKPFTCEFCDFKGRRKGDLVSHLRTHTGEKPFGCKVCDFKCARKGDLKIHSRIHSGHKPFKCEMCDYRSTSKATLNVHLFVHTGEKPFECEVCDYKCARRTDLKYHLRTHTGDKPYKCELCDFRSAQRSSLKIHVRTHTDVKPYTCEFCDYKSASRSNLKIHVYSHTGEKPHTCHICDYKCARQIDLDYHLRTHTGDRPFTCDLCKSRYARKADLKYHLRTGIDGKSFLCKICNYECTRKCSIKLHFLSVHTDDKPFACEICDYRYARQIDLKYHLRTHTGYKPFTCEICDYKCTRKGDLKSHTKTHSDRTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00270154; iTF_00268824;
90% Identity: iTF_00268824;
80% Identity: -