Cnig013517.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis nigra
Gene Symbol
-
Assembly
GCA_958510845.1
Location
OY294029.1:50592495-50596134[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00071 0.037 15.3 1.9 1 23 58 80 58 80 0.98
2 16 9.9e-06 0.00052 21.1 4.2 1 23 86 108 86 108 0.99
3 16 5.4e-06 0.00028 22.0 2.5 1 23 114 136 114 136 0.98
4 16 0.2 10 7.6 1.8 2 23 143 164 142 164 0.96
5 16 0.00053 0.028 15.7 1.2 1 23 170 192 170 192 0.99
6 16 2.7e-06 0.00014 22.9 2.9 1 23 198 220 198 220 0.98
7 16 0.00057 0.03 15.6 6.4 1 23 226 248 226 248 0.98
8 16 0.00067 0.035 15.4 3.1 1 23 254 276 254 276 0.98
9 16 1.6e-06 8.2e-05 23.7 0.9 1 23 282 304 282 304 0.99
10 16 2.6e-05 0.0013 19.8 3.4 1 23 310 332 310 332 0.98
11 16 6e-05 0.0031 18.7 2.7 1 23 338 360 338 360 0.97
12 16 8.2e-05 0.0043 18.3 0.7 1 23 366 388 366 388 0.97
13 16 0.001 0.053 14.8 7.0 1 23 394 416 394 416 0.99
14 16 3.1e-05 0.0016 19.6 4.4 1 23 423 445 423 445 0.99
15 16 5.6e-06 0.0003 21.9 2.6 1 23 451 473 451 473 0.98
16 16 3.9e-05 0.0021 19.3 1.8 1 23 479 501 479 501 0.99

Sequence Information

Coding Sequence
ATGGAAATTCCATATGATTCCAATAGCGGCTCGGAAATCAAAACGGAAGAAGACGAAATGGAGTTTATCAAGTtggaagatttgcatcattcgATCGACATCAAGGAAGAAGCTATTATTGTAGAATTTCACTCGGATGGAGACCGCAAAGCGACAGGAAGGGGTAAACGATTCACGTGTGAAATTTGTGGCTACAAAGCGGCAGATaaaacttgtttaaaaaaacattcaagAATCCATACCGGCGAGAAGCCGTTTACTTGTGATTCTTGTGATTTTACCTGCGCACGTAAAGACAATTTGAAGAGGCATTtgcgaactcataccggcgagaaaccattctCGTGTGAAGTTTGTgatcaaaaattttcagatcaaaCCACGTATAAAAGGCATTTAAAAACCCATTCTGACGAGAAACAGGTCAAGTGCGgaagttgtaattttttatgcGGCAATCGAGgaactttaaaaattcatttaaaaactcataccggcgagaatcCATTTAAGTGTAAAGTATGCGATCATATCTCTGCACGTAAAGGAGATATCAAGATTCATTTAAGGACCCATACTGGAGAGAAACCATTTACTTGTGAAATTTGCGATTACACTTGCGCTCGTCAAGATAATTTGAAAAGACACTTCCGAATTCActccggggaaaaaccgttcagGTGTGAAACTTGTAATCATAAATTTGCGGATCACACGACGTTTAAAAGACACATAAGGATCCATACCGGCGAGAAGCCATTCTCGTGTGAAtcttgtgactataaatgttcgAATAGCGGATCATTAAAAATTCACTCtagaactcatactggcgagaatcCCTATCAGTGTGAAGTGTGCGGCCATACAACCGCACGTAAAGGAGATTTAAAGGTTCATTTAAGAACCCATACTGGCGAGAAGCAGTATACTTGCGAACTATGCGATTACAATTGTGCACGTAAAGATAACCTAAAAAGACATTTTCGAATtcacactggcgagaaaccatttacaTGTGAAATATGCGATCACAAATTTACAGATCAAACAACCTATAAACGGCATTTGGTGGTTCACACTGGGGAGAAGCAGTTTGCTTGTGATATTTGTGACTATAGGGGTACACGTCGGcaggatttaaaaattcattatagAACTCACACTGGTGAGACTCCGTTCAagtgtgaaatttgtgattacaaatgTAAGCAGAAGAGATGCTTAAATATTCACTATCGGATTCATACGGATGGCTTCACTCCGTTTACCTGTGAAACATGCGGCTATAGATGTACATATAAAGCCAGCTTAAAAACTCATTTAAGGACTCACTCCGGTGTCAAACCGTTTGCGTGTGAAGTTTGCAGCTATAAGTGTTCACAGAAAGGGGACTTAACCAGACATATGAGAACTCATACAGGCGGTAGACCGTTTCAGTGCGAACTGTGTGACTCCAAATATTCACGTAAACGTGAATTACGAATTCATTTGAAAACTCACAGAAACGAGAGCCCGATTGCACGCAAAGAAGGCTTAAAAGATTGTTCGGGAAGCGGCTGCCTCACTCAGTCAGCCGGTACTTTCTCTTTTTAG
Protein Sequence
MEIPYDSNSGSEIKTEEDEMEFIKLEDLHHSIDIKEEAIIVEFHSDGDRKATGRGKRFTCEICGYKAADKTCLKKHSRIHTGEKPFTCDSCDFTCARKDNLKRHLRTHTGEKPFSCEVCDQKFSDQTTYKRHLKTHSDEKQVKCGSCNFLCGNRGTLKIHLKTHTGENPFKCKVCDHISARKGDIKIHLRTHTGEKPFTCEICDYTCARQDNLKRHFRIHSGEKPFRCETCNHKFADHTTFKRHIRIHTGEKPFSCESCDYKCSNSGSLKIHSRTHTGENPYQCEVCGHTTARKGDLKVHLRTHTGEKQYTCELCDYNCARKDNLKRHFRIHTGEKPFTCEICDHKFTDQTTYKRHLVVHTGEKQFACDICDYRGTRRQDLKIHYRTHTGETPFKCEICDYKCKQKRCLNIHYRIHTDGFTPFTCETCGYRCTYKASLKTHLRTHSGVKPFACEVCSYKCSQKGDLTRHMRTHTGGRPFQCELCDSKYSRKRELRIHLKTHRNESPIARKEGLKDCSGSGCLTQSAGTFSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00270127;
90% Identity
iTF_00268798;
80% Identity
-