Basic Information

Insect: Cantharis flavilabris
Gene Symbol: -
Assembly: GCA_949152465.1
Location: OX424437.1:3245219-3249978[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00013 0.0081 17.7 1.5 1 23 58 80 58 80 0.98

2 16 9.8e-06 0.00063 21.2 4.2 1 23 86 108 86 108 0.99

3 16 5.4e-06 0.00034 22.0 2.5 1 23 114 136 114 136 0.98

4 16 0.036 2.3 9.9 2.5 2 23 143 164 142 164 0.97

5 16 9.9e-05 0.0064 18.0 0.4 1 23 170 192 170 192 0.99

6 16 2.7e-06 0.00017 22.9 2.9 1 23 198 220 198 220 0.98

7 16 0.00056 0.036 15.6 6.4 1 23 226 248 226 248 0.98

8 16 5.3e-05 0.0034 18.8 2.5 1 23 254 276 254 276 0.98

9 16 1.5e-06 9.9e-05 23.7 0.9 1 23 282 304 282 304 0.99

10 16 2.7e-05 0.0017 19.8 3.5 1 23 310 332 310 332 0.98

11 16 5.9e-05 0.0038 18.7 2.7 1 23 338 360 338 360 0.97

12 16 8.1e-05 0.0052 18.3 0.7 1 23 366 388 366 388 0.97

13 16 0.0008 0.051 15.1 6.5 1 23 394 416 394 416 0.99

14 16 3.7e-05 0.0024 19.3 4.5 1 23 423 445 423 445 0.99

15 16 2.2e-06 0.00014 23.2 2.7 1 23 451 473 451 473 0.98

16 16 1.6e-05 0.001 20.5 1.7 1 23 479 501 479 501 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00013	0.0081	17.7	1.5	1	23	58	80	58	80	0.98
2	16	9.8e-06	0.00063	21.2	4.2	1	23	86	108	86	108	0.99
3	16	5.4e-06	0.00034	22.0	2.5	1	23	114	136	114	136	0.98
4	16	0.036	2.3	9.9	2.5	2	23	143	164	142	164	0.97
5	16	9.9e-05	0.0064	18.0	0.4	1	23	170	192	170	192	0.99
6	16	2.7e-06	0.00017	22.9	2.9	1	23	198	220	198	220	0.98
7	16	0.00056	0.036	15.6	6.4	1	23	226	248	226	248	0.98
8	16	5.3e-05	0.0034	18.8	2.5	1	23	254	276	254	276	0.98
9	16	1.5e-06	9.9e-05	23.7	0.9	1	23	282	304	282	304	0.99
10	16	2.7e-05	0.0017	19.8	3.5	1	23	310	332	310	332	0.98
11	16	5.9e-05	0.0038	18.7	2.7	1	23	338	360	338	360	0.97
12	16	8.1e-05	0.0052	18.3	0.7	1	23	366	388	366	388	0.97
13	16	0.0008	0.051	15.1	6.5	1	23	394	416	394	416	0.99
14	16	3.7e-05	0.0024	19.3	4.5	1	23	423	445	423	445	0.99
15	16	2.2e-06	0.00014	23.2	2.7	1	23	451	473	451	473	0.98
16	16	1.6e-05	0.001	20.5	1.7	1	23	479	501	479	501	0.99

Sequence Information

Coding Sequence: ATGGAAATTCCATACGACTCCAATAGCGGCTCTGAAGTCAAAACAGAAGAAGACGAAATGGAGTTTATCAAGttggaagatttgcatcattcgATTGACATCAAGGAAGAAGCCATTATTGTGGAATTTCACCCGGATGGAGCCCAAAAACCGAAAGTAAGGGGAAAACGATTTTCGTGTGAAATTTGTGGCTACAAAGCGGCAGATAAAACATGTTTAAAGAAACATTTAAgaattcataccggcgagaagccGTTTACTTGTGATTCTTGCGATTTCACCTGTGCACGTAAAGACAATCTGAAGAGGCATTtgcgaactcataccggcgagaaaccattctCGTGTGAAGTTTGCGATCAAAAATTTTCGGACCAGACCACTTATAAGAGGCATTTAAAAACTCATTCTGACGAGAAACAGGTCAAGTGCGgaagttgtaattttttatgtagCAATCGAGGAACTTTAAAAATTCACCTaaaaactcataccggcgagaatcCATTTAAGTGTAAAATATGCGACTATATCTCGGCGCGTAAAGGAGATATCAAGATTCATTTAAGGACCCACACTGGAGAGAAACCTTTCACATGTGAAATTTGCGATTACACTTGTGCTCGTcaggataatttaaaaagacACTTCCGAATTCAttccggggaaaaaccgttcagGTGTGAAACttgtaatcataaatttgcGGATCATACGACGTTTAAAAGACATATAAGAATCCATACTGGCGAGAAGCCGTTCtcatgtgaaatttgtgattataaatgttcaaatAGCGGATCCTTAAAAATTCACTCtagaactcatactggcgagaatcCCTATCAGTGTGAAGTGTGCGGCCATACAACCGCACGTAAAGGAGATTTAAAggttcatttaagaactcacacTGGCGAGAAGCAGTATACCTGCGATCTGTGCGATTACAATTGTGCACGTAAAGATAACCTAAAAAGACATTTTCGAATTCACACTGGCGAGAAGCCATTTACCTGTGAAATTTGCGATCACAAATTCACAGATCAAACAACCTATAAACGGCATTTAGTGGTTCACACTGGGGAGAAGCAGTTTGCTTGTGATATTTGTGACTACAGGGGTACACGTCGGcaggatttaaaaattcattatagAACTCACACTGGCGAGACTCCGTTCcagtgtgaaatttgtgattacAAATGTAAGCAGAAGAGATGCTTAAATATTCACTATCGGATTCACACTGATGACTTCACTCCGTTTACCTGTGAAACATGCGGCTATAAATGTACATATAAAGCCAGCTTAAAGACTCATTTGAGGACTCACTCCGGTGTTAAACCGTTTGCGTGTGAAGTTTGCAACTATAAGTGTTCACAGAAAGGGGACTTAACCAGACATATGAGAACTCATACGGGCGGTAGACCGTTTCAGTGCGAACTGTGCGACTCCAAATATTCACGTAAACGTGAATTGCGAATTCATTTAAGGACTCACAGAACTGAAAGCCTTAAAGAAGGCTTAAAAGATCGTTCGGGCATCGACTGCCTCACTCTATCGGCAAGTGCTTTCCCTTCTTCGTAG
Protein Sequence: MEIPYDSNSGSEVKTEEDEMEFIKLEDLHHSIDIKEEAIIVEFHPDGAQKPKVRGKRFSCEICGYKAADKTCLKKHLRIHTGEKPFTCDSCDFTCARKDNLKRHLRTHTGEKPFSCEVCDQKFSDQTTYKRHLKTHSDEKQVKCGSCNFLCSNRGTLKIHLKTHTGENPFKCKICDYISARKGDIKIHLRTHTGEKPFTCEICDYTCARQDNLKRHFRIHSGEKPFRCETCNHKFADHTTFKRHIRIHTGEKPFSCEICDYKCSNSGSLKIHSRTHTGENPYQCEVCGHTTARKGDLKVHLRTHTGEKQYTCDLCDYNCARKDNLKRHFRIHTGEKPFTCEICDHKFTDQTTYKRHLVVHTGEKQFACDICDYRGTRRQDLKIHYRTHTGETPFQCEICDYKCKQKRCLNIHYRIHTDDFTPFTCETCGYKCTYKASLKTHLRTHSGVKPFACEVCNYKCSQKGDLTRHMRTHTGGRPFQCELCDSKYSRKRELRIHLRTHRTESLKEGLKDRSGIDCLTLSASAFPSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00270127;
90% Identity: iTF_00271527;
80% Identity: -