Cnig013437.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis nigra
Gene Symbol
-
Assembly
GCA_958510845.1
Location
OY294029.1:49941033-49945584[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.13 6.7 8.2 3.6 1 23 117 139 117 139 0.98
2 24 0.02 1 10.8 2.7 2 23 146 167 146 167 0.95
3 24 8.4e-05 0.0044 18.2 0.3 3 23 175 195 174 195 0.99
4 24 0.0027 0.14 13.5 5.0 1 21 201 221 201 223 0.96
5 24 3.2e-05 0.0017 19.5 0.7 1 23 229 251 229 251 0.97
6 24 0.00033 0.017 16.3 0.9 1 23 257 279 257 279 0.99
7 24 0.00018 0.0092 17.2 1.5 1 23 285 307 285 307 0.96
8 24 1.2e-05 0.0006 20.9 2.8 1 23 313 335 313 335 0.99
9 24 0.27 14 7.2 9.1 2 23 342 363 341 363 0.96
10 24 0.046 2.4 9.6 3.0 3 23 371 391 369 391 0.98
11 24 0.00097 0.051 14.9 2.9 1 23 397 419 397 419 0.98
12 24 0.0036 0.19 13.1 7.2 1 23 425 447 425 447 0.96
13 24 0.0046 0.24 12.8 2.9 1 23 453 475 453 475 0.99
14 24 0.0089 0.47 11.9 4.5 1 23 481 503 481 503 0.99
15 24 3.6e-06 0.00019 22.5 3.6 1 23 509 531 509 531 0.99
16 24 0.18 9.5 7.7 1.2 3 23 539 559 537 559 0.94
17 24 0.00055 0.029 15.7 0.5 1 23 565 587 565 587 0.98
18 24 0.023 1.2 10.6 3.5 1 23 593 615 593 615 0.98
19 24 0.00088 0.046 15.0 1.8 1 20 621 640 621 643 0.93
20 24 0.0021 0.11 13.8 1.5 1 23 649 671 649 671 0.98
21 24 0.0027 0.14 13.5 5.0 1 23 677 699 677 699 0.98
22 24 0.00023 0.012 16.8 6.1 1 23 706 728 706 728 0.98
23 24 0.74 39 5.8 1.6 2 23 735 756 734 756 0.95
24 24 1.3e-05 0.0007 20.7 1.8 1 23 762 784 762 784 0.98

Sequence Information

Coding Sequence
ATGGACGAGGAGGGACATTTGGGAGAGCATAATAAATCTGACGAATGTATCAGTGGTGGTTTACCAGTTTCCAATAGTGGATATGTCGATTACAAAATTCTAGCTGTCGAAATGGAGAACACGGAAGTCGGACTATACGATTTGCACTATtcccttgaaattaaaaatgataatccGATTATAGATCATTTTCAGGATAATAAGGAGAAAGCATCAATTGATCCAATCGAATACTTGAAAGTTAAGACGGAAGAAGGGAGCGAGGAAATCAATTtggaagatttgcatcattccataAATCTTAAAGAAGAAATTGCATTGAACGAATCGCAAGCGAATCAAAACCTGTTTCAGTGTAACATTTGCGTTTATAATTGTTCGCTGATGGCACAGTTCAAACGACATCTATTCACCCATACGGGCAAGAAACCGAATGAGTGTTACGTTTGccattataaatgttctcagaAAGCTggtttaaaaaatcatttagtAATTCATACGGACGCGAAACCGCACGGTTGtgacatttgcgattataaaagttCTCGAAAATCCgatttaataatacatttacgAAGTCATtcgggcgagaaaccgtacgAATGTACTATTTGCGACTTTAAATGTTCGCAAAGTGGGAATTTGAAAGATCATTTGAGATGTCACACGGACGTGAAGCCGTATGcgtgtaacatttgcgattataaagcTACTCAAAAAGATTACTTAAAACGGCATATGACAATCCATacaggcgagaaaccgtttaagTGTGACTTATGCGATTATAGATGTGCTGGTAGGTCAAACTTGGCAGGACATGTACGAACTCACATGGGCGAAAAACCTTTCAAGTGCAGCATTTGCGATTATAGTTCCGTAACGAACTACCAGTTGAGACGTCATTCATTAAATCACacaggggaaaaaccgtttaagTGTAACATTTGCGGTTTTAAGTGTACACAGAGGGGAAATCTAAGACTTCACATATTAACCCATACGGGTGAGAGAAAGTGTGAATGTCACATTTGCGGTTATAAATGTTTACATAAATCACGTTTAAACGAACATATGAtgactcataccggcgagaaaccgtatggATGTAACatttgcgactataaatgttctcagaaaagaattctgaaatACCACTTAAGATCTCATACGGGGGATAAACCGTATGAGTGTTCCGTTTGCCATTATAAAAGttcttacaaaaataatttaaaggaaCATTTACTTATGCACTCGGGCAAGAAACCCTACGAGTGTCACAattgcgattataaatctttTCGCAAATCATGCTTGAAAACCCATATGCTAATGCATACGAGTAAGAAATCGTATGAGTGTGGCGTTTGCGGTTATAAATGTTggcgaaaacaaaatttaaaatcgcatTCAAGAACTCATACGGGCGACAAACCGTTTAAGTGTGATATCTGCAATTATAAAACTACATCGAGAGGATATCTACAGTGTCATTTACGAACCCATACTGGTGAAAAGCCCTTTAAATGCAGCATTTGTGATTATAGTTGTTCCACGAAGGATCTGTTAAAACGTCATTTACTgactcatacgggcgagaagCCGTATGGatgtaacatttgcgattataaatcttgGGATAAAGGCCATTtaaagaaacatttatttgcTCATACGGGCGCGAAACCGTACGAGTGTAAgttttgcgattataaaagttCCAGCAATGGAGCACTGAAGGTTCATTTAGTAACTCATACGGACGATAAACCGTATGAGTgcaacatttgcgattataaatgttcttggaaaaaatctttaaaaaatcactCCCTGACTCATACCGGTGAAAAACCGTATAAGTGTGAAATTTGCGATTATAGATGTGCAGTAAAAGAGCAGTTAAAACGTCATTTACCAAAacatacgggcgagaaaccgtacgAGTGTTACACTTGCGGTTACAGATGTTCAATAAAAGGAACCTTAAGATCACATATACTGATTCATATGGGCCTTAAACCGTTTCAGTGTAACTTATGCGATTTTAGATGTTCTTTGAAAAGTAATTTGAAAAGTCATTTTCTAACTCATAATAAAAGCGAGAAACCGTTCGAGTGTAACATCTGTAATTATAAATGTGCAAGAAAAGGGCATTTCAAGCGTCATTTACTAAcccatactggcgagaaacccaTCGAGTGTAAGATTTGCGATTTCAAATGCTTACTTAAAGAGTCATTAAGACAACATTTAGTAACTCATTCGGACGAGAAACCGTTCGaatgtaacatttgcgattataaaactTCCAGAAGAGGACATTTAAATCGCCATTTGCTAATTCATACCAAAAAACGCTGA
Protein Sequence
MDEEGHLGEHNKSDECISGGLPVSNSGYVDYKILAVEMENTEVGLYDLHYSLEIKNDNPIIDHFQDNKEKASIDPIEYLKVKTEEGSEEINLEDLHHSINLKEEIALNESQANQNLFQCNICVYNCSLMAQFKRHLFTHTGKKPNECYVCHYKCSQKAGLKNHLVIHTDAKPHGCDICDYKSSRKSDLIIHLRSHSGEKPYECTICDFKCSQSGNLKDHLRCHTDVKPYACNICDYKATQKDYLKRHMTIHTGEKPFKCDLCDYRCAGRSNLAGHVRTHMGEKPFKCSICDYSSVTNYQLRRHSLNHTGEKPFKCNICGFKCTQRGNLRLHILTHTGERKCECHICGYKCLHKSRLNEHMMTHTGEKPYGCNICDYKCSQKRILKYHLRSHTGDKPYECSVCHYKSSYKNNLKEHLLMHSGKKPYECHNCDYKSFRKSCLKTHMLMHTSKKSYECGVCGYKCWRKQNLKSHSRTHTGDKPFKCDICNYKTTSRGYLQCHLRTHTGEKPFKCSICDYSCSTKDLLKRHLLTHTGEKPYGCNICDYKSWDKGHLKKHLFAHTGAKPYECKFCDYKSSSNGALKVHLVTHTDDKPYECNICDYKCSWKKSLKNHSLTHTGEKPYKCEICDYRCAVKEQLKRHLPKHTGEKPYECYTCGYRCSIKGTLRSHILIHMGLKPFQCNLCDFRCSLKSNLKSHFLTHNKSEKPFECNICNYKCARKGHFKRHLLTHTGEKPIECKICDFKCLLKESLRQHLVTHSDEKPFECNICDYKTSRRGHLNRHLLIHTKKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00268832;
90% Identity
-
80% Identity
-