Cfla015662.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis flavilabris
Gene Symbol
-
Assembly
GCA_949152465.1
Location
OX424437.1:4160215-4166405[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.028 1.8 10.3 3.8 1 23 120 142 120 142 0.98
2 22 0.032 2 10.1 2.6 2 23 149 170 149 170 0.95
3 22 0.0003 0.019 16.5 1.3 3 23 178 198 177 198 0.99
4 22 1.2e-05 0.0008 20.8 2.3 1 23 204 226 204 226 0.99
5 22 3.4e-05 0.0022 19.5 0.7 1 23 232 254 232 254 0.98
6 22 0.04 2.5 9.8 6.9 1 23 260 282 260 282 0.99
7 22 0.00042 0.027 16.0 1.8 1 23 288 310 288 310 0.96
8 22 0.00012 0.0074 17.8 2.9 1 23 316 338 316 338 0.98
9 22 0.98 63 5.4 8.9 2 23 345 366 344 366 0.96
10 22 0.03 1.9 10.2 4.3 1 23 372 394 372 394 0.98
11 22 0.00026 0.017 16.7 3.0 1 23 400 422 400 422 0.98
12 22 0.0096 0.61 11.7 6.4 1 23 428 450 428 450 0.98
13 22 0.0099 0.63 11.7 5.0 1 23 456 478 456 478 0.99
14 22 0.0018 0.12 14.0 4.8 1 23 484 506 484 506 0.99
15 22 0.00025 0.016 16.7 4.0 1 23 512 534 512 534 0.98
16 22 0.0097 0.62 11.7 3.0 3 23 542 562 540 562 0.96
17 22 0.0011 0.068 14.7 3.2 1 23 568 590 568 590 0.98
18 22 0.0092 0.59 11.8 1.2 1 23 596 618 596 618 0.99
19 22 0.00089 0.057 15.0 1.5 1 20 624 643 624 646 0.93
20 22 0.0018 0.11 14.0 2.8 1 23 652 674 652 674 0.98
21 22 0.019 1.2 10.8 7.5 1 23 680 702 680 702 0.98
22 22 0.00017 0.011 17.3 7.9 1 23 709 731 709 731 0.98

Sequence Information

Coding Sequence
ATGGACGAGGAGGGACATTTGGAAGAGCATAATAAAACTGAAGAAAGCATCAATGGGTTGCCAGGTTGTAATGGTGGATATGACGATGACAAAATTCTAGCAGTCGAAATGGAGAGTACGGAAGTCGGACTAAACGATTTGCACCATTCcgatgaaattaaaaatgattatcTGATTATGGAAAATCTACAGGATAATAAGAAGAAAACACCAATTGATTCAAGCAAATACTTCAAAGTTAAGACGGAAGAAGAAAGAGAggaaattaatttggatttgcatcattccatcaaccttaaagaagaaattttattGACCGAATCGCAAGCGAATCAAGATTATACTAGCAAAAACCTATTTCAATGTAACAAATGCGATTATAATTGTTCGGTAATAGCTCAGTTCAAACAACATCTGTTCACTCATACGGGCAAGAAACCGAATGAGTGTTACGTTTGCCATTATAAATGCTCTCAGAGAGCAggtttaaaaaatcatttagtAATTCATACGGATGCGAAACCGCACGGTTGTGagatttgcgattataaaagttgtCGAAAATCAGATTTAATAATACATTTACGAAGTCATtcgggcgagaaaccgtacgaATGTAATATTTGCGACTTTAAATGTTCGcaaagtggaaatttaaaagatcATTTGAGAAGTCATACGGACGAGAAACCGTATGcgtgtaacatttgcgattataaagcTTCTCAAAAAGATTATTTGAAgcggcatttaaaaattcataccggcgagaaaccatttaaatgTAACTTTTGCGATTATAGATGTGCTTGCAAGTCGAACTTGACGGGACATCTACGAACTCACATGGGCGAAAAACCTTTCAAGTGCAACCTTTGCGATTATAGTTCCGTAACGAGCTACCAGTTGAGACGTCATTCATTAAatcatacgggggaaaaaccgtttgagtgtaacatttgcggaTTTAAGTGCACGCAAAGGGGAAATCTAAGACTTCATAAATTAACCCATACGGGTGAGAAAAAGTGTGAATGTCAcatttgcggttataaatgttTACATAAATCTCGTTTAAACGAACATTTGAtgactcataccggcgagaaaccgtatgaatGTAGCATCTGTAACTATAAATGTTCTCAGAGAAGAATTCTCAAATACCACTTAAGAtctcatacgggcgagaaaccgtatgagtgtcacatttgcaattataaaagttcttacaaaaataatttaaaggaaCATTTACTCATGCATACGGGCAAGAAACTCTACGAGTGTCACAattgcgattataaatcttATCGCAAATCATGCTTGAAAACCCATGTGCTGATGCATACCAGTAAAAAACCGTATGAGTGTGGCGtttgcggttataaatgttGGCGAAAACACAATTTAAAGTCACATTCAAGAACTCATACGGGCGACAAACCGTTTAAGTGTGATATCTGTAATTATAAAACTACATCGAAAGGATATTTACAGTGTCATATGCGAACCCACACTGGCGAAAAACCTTTTAAATGTAACGAATGCGATTATAGTTGTTCAATGAAGGATATGTTAAAACGTCATTCACTAACGCATCAGGGCGAAAAGCCGTATGGatgtaatatttgcgattataaatcttATGATAAAGCTCATTTAAAGCATCATTTGTTTGTTCATACGGGCGCGAAACCGTACGAGTGTAAGTTTTGCGATCATAAATGTTCCAGCAATGGAGCACTGAAGGCTCATTTAGTAACTCATACGGACGATAAACCGTATGAGtgcaacatttgcgattataaagcTTCTTGGAAAAAATCTTTACAAAGTCACTACAAaactcataccggtgaaaaACCGTATAAGTGTGAAATTTGCGATTACAGATGCGCAGTGAAAGGGCAGTTACGACGTCATTTACCGAaacatacgggcgagaaaccgtacgagtgttacatttgcaattataaatgttcactaAAGGCAACCTTAAGAAGACACATACTGAATCATATGGGCCTTAAACCGTTTCAGTGTAACTTGTGCGAGTTTAGATGTTCTATGAAAAGCAATCTGAAACATCATTTTCTAACTCATAATAAGAGCGAGAAACCGTTCGAGTGTAACATCTGCCATTATAAATGTGCCAGAAAAGGCCATCTCAAGCGTCATTTACAAACCCATACTGGCGAGAAATCCATCGAGTGTACTGACGGTATAGTGATCGATGGCGTGGTGAGTGCCGGTATAGTGATCGATGGCGTGGTGAGTGCCGGTATAGTGATCGATGGCGTGGTGAGTGTCGGTAGAGTGATCGATGGCGTGGTGAGTGTCGGTAGAGTGATCGATGGCGTGGTGAGTGTCGGTAGAGTGATCGATGGCGTGGTGAGTGACGGTATAGTGATCGATGGCGTGGTGAGCAATGGTGTAGTAGGCGACAGCGTACTGGTCGACGACGTAGTAATGGCTTGTGTAGTAGTTTCCTCCTCGTCATAG
Protein Sequence
MDEEGHLEEHNKTEESINGLPGCNGGYDDDKILAVEMESTEVGLNDLHHSDEIKNDYLIMENLQDNKKKTPIDSSKYFKVKTEEEREEINLDLHHSINLKEEILLTESQANQDYTSKNLFQCNKCDYNCSVIAQFKQHLFTHTGKKPNECYVCHYKCSQRAGLKNHLVIHTDAKPHGCEICDYKSCRKSDLIIHLRSHSGEKPYECNICDFKCSQSGNLKDHLRSHTDEKPYACNICDYKASQKDYLKRHLKIHTGEKPFKCNFCDYRCACKSNLTGHLRTHMGEKPFKCNLCDYSSVTSYQLRRHSLNHTGEKPFECNICGFKCTQRGNLRLHKLTHTGEKKCECHICGYKCLHKSRLNEHLMTHTGEKPYECSICNYKCSQRRILKYHLRSHTGEKPYECHICNYKSSYKNNLKEHLLMHTGKKLYECHNCDYKSYRKSCLKTHVLMHTSKKPYECGVCGYKCWRKHNLKSHSRTHTGDKPFKCDICNYKTTSKGYLQCHMRTHTGEKPFKCNECDYSCSMKDMLKRHSLTHQGEKPYGCNICDYKSYDKAHLKHHLFVHTGAKPYECKFCDHKCSSNGALKAHLVTHTDDKPYECNICDYKASWKKSLQSHYKTHTGEKPYKCEICDYRCAVKGQLRRHLPKHTGEKPYECYICNYKCSLKATLRRHILNHMGLKPFQCNLCEFRCSMKSNLKHHFLTHNKSEKPFECNICHYKCARKGHLKRHLQTHTGEKSIECTDGIVIDGVVSAGIVIDGVVSAGIVIDGVVSVGRVIDGVVSVGRVIDGVVSVGRVIDGVVSDGIVIDGVVSNGVVGDSVLVDDVVMACVVVSSSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00271525;
90% Identity
-
80% Identity
-