Cnig013342.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis nigra
Gene Symbol
-
Assembly
GCA_958510845.1
Location
OY294029.1:49323346-49325397[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 7.2e-05 0.0038 18.4 0.2 1 23 43 65 43 65 0.97
2 23 0.0005 0.026 15.8 2.6 1 23 71 93 71 93 0.99
3 23 0.00065 0.034 15.4 2.6 1 23 99 121 99 121 0.97
4 23 0.00054 0.028 15.7 2.8 1 23 127 149 127 149 0.98
5 23 9.5e-05 0.005 18.1 0.9 1 23 155 177 155 177 0.98
6 23 8.5e-05 0.0044 18.2 0.6 1 23 183 205 183 205 0.99
7 23 0.0027 0.14 13.5 3.4 1 23 211 233 211 233 0.96
8 23 0.0093 0.49 11.8 4.2 1 23 239 261 239 261 0.99
9 23 0.00017 0.0091 17.2 0.8 1 23 267 289 267 289 0.97
10 23 0.00095 0.05 14.9 2.0 1 23 295 317 295 317 0.99
11 23 0.00013 0.007 17.6 0.8 1 23 323 345 323 345 0.97
12 23 0.00097 0.051 14.9 3.2 1 23 351 373 351 373 0.98
13 23 0.00087 0.045 15.0 4.2 1 23 379 401 379 401 0.98
14 23 0.0009 0.047 15.0 4.1 1 23 407 429 407 429 0.98
15 23 0.0036 0.19 13.1 5.7 1 23 435 457 435 457 0.98
16 23 0.0016 0.084 14.2 5.3 1 23 463 485 463 485 0.98
17 23 0.0027 0.14 13.5 1.5 1 23 491 514 491 514 0.95
18 23 0.0006 0.031 15.5 0.5 1 23 520 542 520 542 0.99
19 23 0.00041 0.022 16.1 2.3 1 23 548 570 548 570 0.97
20 23 9.3e-05 0.0049 18.1 3.0 1 23 576 598 576 598 0.98
21 23 0.016 0.83 11.1 1.2 1 23 604 626 604 626 0.95
22 23 3.3e-05 0.0017 19.5 1.3 1 23 632 654 632 654 0.99
23 23 4e-05 0.0021 19.2 0.9 1 23 660 682 660 682 0.99

Sequence Information

Coding Sequence
ATGAAGACGGAAGTAATAGAGCCGAAGGTGGAAGAGTTGCACCATTCcatcgacattaaagaagacacttcaatttttgaatttcttccgAACAAAAAATGCGAGTTCAAACCAAGCCTGAACCAGTTTGCATGTGCAATTTGCGACTCGAAATTTGCAAGAAAAGATGGTTTGAGAATTCATTTAAGAAGTCACACCGGTGACAAACCCTATACGTGTGGAATTTGTGAGTATAAATGTACCCGTAAGGATGTTTTGAAACTGCACTTACGATCCCATACTGGCGAGAGACCGTTTGCTTGCCATATCTGTGTATGTAAATACGCCCGAAAGGAAAGTCTGACCGTTCATTTGAGGATTCATACGGGCGAGCGGCCGTTTACTTGTCGGAGTTGTGACTATAGATGTGCACGTAAAGAAGACTTGATCATGCATTTACGAACTCACACAGGCGAAGAACCATTTTCGTGTCAATTCTGTGATTATACAACTCCGCGTCTGGGCAATTTAAGAATTCATCTGAAAACtcacaccggggaaaaacctTATTCGTGTGAAATTTGCGACTATAAATCTGCGTTTATGGGCCAGCTCAAAAGGCATATCAGAACtcacaccggggaaaaaccgtttatCTGTTTTCACTGTGGTACCAAATTTGCGGCCAAGGATTGTTTGAAAAAGCATTTAGTTGTTCACACTGGCGATAAGCCGTTTAAATGCGAATTTTGCGAATTTAAATGTGTACGTAGGGATTTTCTAGAAATTCACTTGAGAAaacataccggcgaaaaaccatttatgTGTgatatttgtgattataaatctaCACAGAAGAAAAATCTGGTAAATCACTTGACGgttcataccggggaaaaaccgtttaagTGTGAATTTTGTGAAGTTAGATGCATAGACAAAACTGGTTTAAAGAGGCATATAGAAACTCATGCAACTGAGAAACTGTTTAGTTGTGATATTTGCGATTCTAAGTTCGCAACGAAAAGGTATTTACTGAAACATGTAAGAGCTCATACGAGCGAGAAGAGGTTCAAATGTTcaatttgcgaatataaatgtgcGCAGAAGGTGAATTTGAGTACTCACTTTAGAATTCATACGGGCGAGAAGCCGTTTGAGTGTAAAATCTGCGGCTACAAATGTGCATATCAACATGGCTTGAAGTATCACTTATTAACTCATtcaggggaaaaaccgttttactgtaaaatttgtaactttcaATGTGCACGGAAGGTAAATCTGAGTAGTCATTTGAAAACTCACGCTGGAGTTAAATCATTTATGTGTGATTTTTGCGACTACAAATGCACACATAAGCAAGGATTGAAAAGTCATATCAAAGTTCATACAGGCGACAAACcgtataattgtaaaatttgttctCATCAATTTGCGCATAAACAAAGTTTGGATAATCATTTGAGAACTCATACGGGAGAGAAACCGTTTGCCTGCGAAAGTTGTGACTACAAATGTGCACGAAAGGATGCTTTACGGAATCATGTAAAACTCACCCACATTGGGGGAAAACCCTACAAGTGTGAAGTTTGCGATTTTAGATCTTCAACGAAAGCGTCTCTGGGTACTCACTTAAAAATCCACACCGGTGAGAAACCGTTCGCCTGTACCGTTTGTGAGTACCGAACTGCGCATCAACAAAGTTTGAAAAATCACTTAAGAAcccataccggggaaaaaccttTTTCATGTAAACTATGCTCGAACAAATTTTCAGATCAGAGTACTTTGAGGAAGCATTTGAAACTccacaccggggaaaaaccgtttttgTGTGGAATTTGCGATTTTAGAACTGCACATAGAGAATATCTTAAAATACATTCGAgaattcatactggcgagaaaccatacAAATGTGTTATATGCGACTATCAGTGTGCGCGTAAGGGAGACTTAACTACTCATTTAAGAATTCATACAGGCGACAAACCGTATAGGTGTGAAATCTGCGACTTCAGAACTGCTCAGAGTGGACATTTAAGTGCACACGTAAGAACTCATAAGTGA
Protein Sequence
MKTEVIEPKVEELHHSIDIKEDTSIFEFLPNKKCEFKPSLNQFACAICDSKFARKDGLRIHLRSHTGDKPYTCGICEYKCTRKDVLKLHLRSHTGERPFACHICVCKYARKESLTVHLRIHTGERPFTCRSCDYRCARKEDLIMHLRTHTGEEPFSCQFCDYTTPRLGNLRIHLKTHTGEKPYSCEICDYKSAFMGQLKRHIRTHTGEKPFICFHCGTKFAAKDCLKKHLVVHTGDKPFKCEFCEFKCVRRDFLEIHLRKHTGEKPFMCDICDYKSTQKKNLVNHLTVHTGEKPFKCEFCEVRCIDKTGLKRHIETHATEKLFSCDICDSKFATKRYLLKHVRAHTSEKRFKCSICEYKCAQKVNLSTHFRIHTGEKPFECKICGYKCAYQHGLKYHLLTHSGEKPFYCKICNFQCARKVNLSSHLKTHAGVKSFMCDFCDYKCTHKQGLKSHIKVHTGDKPYNCKICSHQFAHKQSLDNHLRTHTGEKPFACESCDYKCARKDALRNHVKLTHIGGKPYKCEVCDFRSSTKASLGTHLKIHTGEKPFACTVCEYRTAHQQSLKNHLRTHTGEKPFSCKLCSNKFSDQSTLRKHLKLHTGEKPFLCGICDFRTAHREYLKIHSRIHTGEKPYKCVICDYQCARKGDLTTHLRIHTGDKPYRCEICDFRTAQSGHLSAHVRTHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00268789;
90% Identity
iTF_00268789;
80% Identity
-