Basic Information

Insect: Cantharis nigra
Gene Symbol: -
Assembly: GCA_958510845.1
Location: OY294028.1:73526753-73529771[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.5e-05 0.00078 20.6 1.1 1 23 145 167 145 167 0.98

2 15 2.4e-07 1.3e-05 26.2 0.6 1 23 173 195 173 195 0.98

3 15 5.3e-05 0.0027 18.9 3.1 1 23 201 223 201 223 0.98

4 15 3.5e-06 0.00018 22.6 4.9 2 23 230 251 229 251 0.97

5 15 2e-06 0.0001 23.4 1.7 1 23 257 279 257 279 0.99

6 15 8.7e-06 0.00046 21.3 3.1 1 23 285 307 285 307 0.98

7 15 4.3e-06 0.00022 22.3 0.8 1 23 313 335 313 335 0.98

8 15 4.1e-07 2.1e-05 25.5 1.2 1 23 341 363 341 363 0.95

9 15 2e-05 0.0011 20.2 1.5 1 23 369 391 369 391 0.96

10 15 3.6e-07 1.9e-05 25.7 1.5 1 23 397 419 397 419 0.98

11 15 3.2e-06 0.00017 22.7 2.0 1 23 428 450 428 450 0.96

12 15 7.9e-06 0.00041 21.5 3.7 1 23 456 478 456 478 0.98

13 15 1.5e-06 7.8e-05 23.7 0.3 1 23 484 506 484 506 0.99

14 15 9.2e-06 0.00048 21.2 2.2 1 23 512 534 512 534 0.99

15 15 0.00011 0.0056 17.9 0.3 1 22 540 561 540 564 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.5e-05	0.00078	20.6	1.1	1	23	145	167	145	167	0.98
2	15	2.4e-07	1.3e-05	26.2	0.6	1	23	173	195	173	195	0.98
3	15	5.3e-05	0.0027	18.9	3.1	1	23	201	223	201	223	0.98
4	15	3.5e-06	0.00018	22.6	4.9	2	23	230	251	229	251	0.97
5	15	2e-06	0.0001	23.4	1.7	1	23	257	279	257	279	0.99
6	15	8.7e-06	0.00046	21.3	3.1	1	23	285	307	285	307	0.98
7	15	4.3e-06	0.00022	22.3	0.8	1	23	313	335	313	335	0.98
8	15	4.1e-07	2.1e-05	25.5	1.2	1	23	341	363	341	363	0.95
9	15	2e-05	0.0011	20.2	1.5	1	23	369	391	369	391	0.96
10	15	3.6e-07	1.9e-05	25.7	1.5	1	23	397	419	397	419	0.98
11	15	3.2e-06	0.00017	22.7	2.0	1	23	428	450	428	450	0.96
12	15	7.9e-06	0.00041	21.5	3.7	1	23	456	478	456	478	0.98
13	15	1.5e-06	7.8e-05	23.7	0.3	1	23	484	506	484	506	0.99
14	15	9.2e-06	0.00048	21.2	2.2	1	23	512	534	512	534	0.99
15	15	0.00011	0.0056	17.9	0.3	1	22	540	561	540	564	0.89

Sequence Information

Coding Sequence: ATGGAATTATTAAATTCTTACAACGAAAGTTCTTGCAGAACGTGCTTAGGCGAATGCAATAAATTAACGTCAATATATGAAAATAATTCAGCCGATCTTACCTTTGCAAACATGATCATGTCTTTTACTTCTGTTCTAttgGAAGAAAACGATGGATTATATGGTTACATTTGTGAAAGTTGCGTCACGCAAGTGTCGAATGCTTATAAGTTTATGAAAAGATGTGAAGAAGtagatttaactttgaaattgtttcttaattcgTGTAAAACAACTTTAACTGGAGAGCTAGAAATGGAATCCGATGTTATTGCCAATGACAAACAAGGAGATGTAAACATTTCAGAGATGGTTAGTTCAACCAATTTAGATGAATTACTTGAAATCGATGATGGTTGTGATTtgatttcaaatgtaaaaaataggaaactttttgtttgtaaaatttgccAAAAAAGCTATGTACAACATACTGGATTAGTGTGGCACATGAGATTGCACACGGGAGAAAGACCTTTTGTATGCAATCAATGCGGTCGAGGTTTTATAAGATCCGATGATTTATTAAGGCATCGACGTACTCACACCGGCGAGAGACCTTTTGTTTGTCAAATTTGTAATCGAGGATTTAaacaaaagtttcatttatcggaACATGAACGATCTCATAATGGTAAACGAGAACTTAAGTGCAAAGAATGTGGTAAATGTTTCGTAAGACATGGAGTTTTAAGAACCCACATGAGGACACATACCGGAGTAAAAGCATATTCCTGCAAATTATGctctaaaaattttgttggatCTGATACTCTGACAAAACATATGAGAACACACACTGGTGAAAAACCTTATAACTGCAaCCACTGTAACCGGTCATTTGCACAATCAAATCAGTTACAAGTGCACTTTCGAATTCACTCGGGTGAAAAACCATACGTTTGTAACGTATGCAGCAAAGCTTTCACGCAACAGCACGGTCTAAACGTTCATTTACTCAGTCACACAGGAGAAAGACCATTTTTGTGTGCGACTTGTGGAAAGTCGTTTATCAGATCTGATGATCTCAAAAAGCACACACGGACCCACAGTCAAGAGAGACCCTATTTGTGTACGCTTTGTCCTAAAGCCTTCATACAATCATTTCATTTATCCGAACATTTAAGAACTCACACCGAGAATAAGGAATTTTCATGTGGTGTTTGTAACAAAACATTTTCACGTAATGGTTCACTTCGATCACATTTAAAAACGCATACTCAAAGTTATGTCGAAAAACAGCACGCATGCAGTATATGTGAAAAGCGATTTAGTGTCAGTTACTCACTGAACAAACACATGTTGACTCATACCGGAGAAAGACCTCATCGATGTCCATTTTGTCCAAAGacATTCACTCAAACTGGTCACCTTGAAACTCACTTAAAAATACACACAGGTGAAAAACCTTATGTTTGTAATATTTGCAACAAAGGTTTTGCCGTTAGTTCTCGACTAACTGTCCATATGAGGAGTCACACAGGCGAGAGGCCTTATACTTGCTCACTGTGTGGTAAAGGATGTACAACATCGACAATGTTAAAAATTCATGTGCGAACGCACACGGGAGAGACACCTTATTTATGTCCGTCCTGTCCTAAAGCATTTTCAAGATCGGATTTACTCAATTTGCATAGAAAAAATAACGGgcattga
Protein Sequence: MELLNSYNESSCRTCLGECNKLTSIYENNSADLTFANMIMSFTSVLLEENDGLYGYICESCVTQVSNAYKFMKRCEEVDLTLKLFLNSCKTTLTGELEMESDVIANDKQGDVNISEMVSSTNLDELLEIDDGCDLISNVKNRKLFVCKICQKSYVQHTGLVWHMRLHTGERPFVCNQCGRGFIRSDDLLRHRRTHTGERPFVCQICNRGFKQKFHLSEHERSHNGKRELKCKECGKCFVRHGVLRTHMRTHTGVKAYSCKLCSKNFVGSDTLTKHMRTHTGEKPYNCNHCNRSFAQSNQLQVHFRIHSGEKPYVCNVCSKAFTQQHGLNVHLLSHTGERPFLCATCGKSFIRSDDLKKHTRTHSQERPYLCTLCPKAFIQSFHLSEHLRTHTENKEFSCGVCNKTFSRNGSLRSHLKTHTQSYVEKQHACSICEKRFSVSYSLNKHMLTHTGERPHRCPFCPKTFTQTGHLETHLKIHTGEKPYVCNICNKGFAVSSRLTVHMRSHTGERPYTCSLCGKGCTTSTMLKIHVRTHTGETPYLCPSCPKAFSRSDLLNLHRKNNGH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00927937;
90% Identity: iTF_00270114; iTF_00272975; iTF_00268788; iTF_00927937; iTF_01294083; iTF_01292017;
80% Identity: -