Cnig013460.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cantharis nigra
Gene Symbol
-
Assembly
GCA_958510845.1
Location
OY294029.1:50194636-50201819[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 0.0079 0.41 12.0 1.4 1 23 38 60 38 60 0.98
2 32 1.2e-06 6.5e-05 24.0 2.0 1 23 66 88 66 88 0.98
3 32 0.0036 0.19 13.1 1.1 1 23 94 116 94 116 0.99
4 32 0.00024 0.012 16.8 0.3 1 23 122 144 122 144 0.96
5 32 0.017 0.87 11.0 0.6 1 23 150 172 150 172 0.96
6 32 0.0088 0.46 11.9 3.2 1 23 177 199 177 199 0.97
7 32 0.00052 0.027 15.7 2.5 1 23 205 227 205 227 0.98
8 32 0.0035 0.18 13.1 2.2 1 23 233 255 233 255 0.97
9 32 0.61 32 6.1 6.1 1 23 308 330 308 330 0.99
10 32 0.0024 0.13 13.6 1.4 2 23 337 358 336 358 0.97
11 32 0.084 4.4 8.8 1.6 1 23 364 387 364 387 0.96
12 32 0.021 1.1 10.7 3.6 1 23 394 416 394 416 0.99
13 32 0.0017 0.091 14.1 1.1 1 23 422 444 422 444 0.98
14 32 0.06 3.1 9.3 1.5 1 23 450 473 450 473 0.96
15 32 1.6e-05 0.00086 20.5 2.8 1 23 479 501 479 501 0.99
16 32 0.36 19 6.8 3.7 1 23 507 529 507 529 0.98
17 32 0.00017 0.0087 17.3 0.2 1 23 535 557 535 557 0.98
18 32 0.0026 0.13 13.5 0.3 5 23 567 585 564 585 0.95
19 32 7.8e-06 0.00041 21.5 1.2 1 23 591 613 591 613 0.98
20 32 0.0022 0.11 13.8 7.5 1 23 619 641 619 641 0.98
21 32 0.00016 0.0082 17.4 4.0 1 23 716 738 716 738 0.99
22 32 0.00076 0.04 15.2 3.6 1 23 744 766 744 766 0.99
23 32 0.035 1.8 10.0 2.3 1 23 772 795 772 795 0.95
24 32 0.0011 0.058 14.7 2.8 1 23 801 823 801 823 0.98
25 32 0.4 21 6.6 2.0 1 23 829 851 829 851 0.98
26 32 0.00013 0.007 17.6 4.1 1 23 857 879 857 879 0.99
27 32 0.0038 0.2 13.0 0.3 1 23 885 907 885 907 0.94
28 32 1.6e-06 8.1e-05 23.7 1.9 1 23 913 935 913 935 0.99
29 32 0.01 0.54 11.7 1.6 1 23 941 963 941 963 0.99
30 32 0.096 5 8.6 2.8 1 23 969 991 969 991 0.99
31 32 0.0015 0.081 14.2 0.3 1 23 997 1019 997 1019 0.94
32 32 6.3e-05 0.0033 18.6 3.1 1 23 1025 1047 1025 1047 0.99

Sequence Information

Coding Sequence
ATGGAAGTTAAGGTAGAAGATTTGCATCATAgcattgacattaaagaagagaTTTCAATTCCAGAAACTAAACCGAATGTAGAATGCAAACCAGACCCAGTTAAGAAACAGTTTAGTTGTGAAATTTGTGAGTATAAATGTGCACTTAAGGGAAGGCTAAAtattcatttaagaactcataccggcgacaAACCGTTTACGTGTGAAGTTTGCGGTTACAAATGTACAACGAACTCAGCTCTACGAAGACATATAAGGATTCATACTGGTGAAAAGCCATTTAAGTGTGAATTTTGCGACTATAAATCTGCACAACAGGGAAAGGTAAGCATTCACATGAGAAGACATACCGGCATTAAACCATATTTGTGTTCGATTTGTGATTATAAGGGTGCACgcaaagaaaacttaaaaattcatttaatgaCCCATACTGGTGAGAAGCCCTACAGTTGTATAATTTGCGATTTCAAAACTGCACGTAAAAATGATTTAACCGGACACTTAAGAACTCATACAGGGGAGTTTTTTGCATGTGAACTTTGTGACTATAAGTGTAAACAACGAGGAAGATTGCAAGATCATACAAAAACCCATACTGGCGAGAAGCCGTATATGTGTGATATATGCGAATATAAATGTGCACGTAAACAATACTTAAAGATACATTTGatgactcatactggcgagaaaccctTCACCTGTAAAATCTGTGATTTTAGAAGCTTATATCGGGATGACTTGAAGAGACATTTAAGAACTCACACCGGCGAACCTCCATGCCATTCAAATAGCTGCTCCCAAATTAAGACAGAAATAGAAGAAGTAGATTTCAAGTTGGAGGATTTGCATCATTCGGTTGATATTAAAGAGGAAATTTTAATTCTAGAATCTCAACTGTCCGAACCAGACAAGAAGCCGTTTAAATGTGAAAGTTGTGATTACAAATGTGAGCATAAGGGAATTTTCGAAAGACATCTACGAAAGCACACCGAGAAGAAACTGTTGACATGCGAAGTATGTGGAtacaaatgtaaacaaaaatcaattttaaaagtacATGTAAGAATCCACTCTGGCGATAGGCCCTTTTCGTGTGGACTCTGCGACTACAAGGGTTCACGGAAGAACAGATTAAAACAGCATTATGCCAGAACTCATAGTTGCGAAGAGGAACAGTATAGGTGTGAAGTTTGTGAGTATAAATGTGCACATAAGGGAATTCTAGAAAGACATTTAAGAAAGCACGTAGACAAAAAACCGTTTACGTGTGATGTTTGCGGTTACAAATGCAAGCAAAAATCCATCTTGGAGGTTCATGCAAGAATCCACACCGGGGACAAGCcgtttacatgtaaaatttgtgactacAAGGGTGCCCGGAAGGACAGAGTAAAGCAGCATTACTTAAGAACTCATGCTACCGAGAAACAGTTTACGTGTGAAGTCTGCGGCTACCAATGTACAACAAACGCATATTTAAAAAGACACGTAAGGACTCATACTGGTGAGAAGCCCTTTTCATGTGGATTTTGCAACTATAAATGTGCACAGCAAGCCAGGTTGCGTTTTCATATAAGAACTCACACCGGCGATAAGCCGTTTATATGCGCAGTCTGTGACCTGAAGTTTGCAGAGAAAGAAAAACTCAAAGTTCATTTGAGAACTCACAcaggcgaaaaaccgtttgggTGTATAATTTGCGATTTTAGGAGTGCGCGCCAGGACGACTTAAATAAACATATAAGAACTCATACAGGCGAGAAACTGTTTCCCTGTGAAATCTGCGACTATAAGAGTTCGCGTAAGGAAAACTTAAAGActcatttaaaaactcatacAGGCTTCAAACCCTTCATGTGCGAGATTTGTGAATACAAATGTGCGCATAAGCATagcttaaaaaatcatttaagaactcatacagGTGAGAAACCGTTTGGTTGCGATATTTGTGATTACAAGTGTACACAGAAGGAAACTTCAAGCCACTCGAATATCTACCCGCAAATCAAGATAGAAATAGAGGAGGTAGTGGAAGTTAAGTTGGAGGATTTGCATCATTCTGTCGACATTAAAGATGAGATTATAATTCAGGAATATCAACAGGATTTGGAATGCAAACCCGAAACAAGCAGTAAACCGTTTAAGTGTGAActgtgcgattataaatgtgcacaCAGCGGAGCCCTACAGAGGCATTTAAAAACTCATACCGGAGACAAACAGTTTACGTGTGGAATTTGTGAATATAAATGTTCACGAAAGGATAGATTGAAGATCCATTTGAAAACTCACACCGACAGCAAAGCGTTCAAGTGTGAGATTTGCGATTTTACATGCGCTCGGGTGGAAAAATTAAACCTTCATTTCTTACGAACGCATTCCAGCAAGAAGCAGTTCATGTGCGACGTTTGCGGCTATAAATGTAAAACTAACTCAATTTTAAAAaggcatttaaaaattcatacagTAGAAAAACCGTTCAGGTGcgaattttgtgaatttaaatgTTCTCAAGAAGTGAGGTTAAGTATTCACGTGAGGGCtcacactggcgagaaaccatttaccTGCGAAACTTGCGATTACAAATGTGCATCGAAAGGAGATTTTAAACGGCATTTAAGAACTCACACTGGTGAAAAGCCGTATGCTTGTATAATATGCGATTTTACGAGTGCGCGTCAAAATGATTTGAACAAACATGTAAGAACTCATACAGGCGATAAACCGTTCACCTGTGAGCTGTGTGGCTACAAGTACACAACAAACGCATATTTGAAAAGGCATCTCCGGACTCATTCCGGCGAGAAACCCTTTCAGTGTGAATTTTGTGATTATAAGTGTGCAGAACAGGGCAGATTAAACATTCATGTAAGAAGCCATACTGGCGATAAACCATTTAAATGTGAAAATTGTGACTATAGGGGTGCATGTAAGGGAGACTTGAAAAGACATTcgagaactcataccggcgagaagccGTATGCCTGTataatttgtgattttaaaagtGCCCGTCGGGATGATTTAAACAAACATATCAGAACCCATACAGGCGAGAAGCCGTTTACATGCGATACTTGTGACTTTAGAACTTCTCGTAAAGAAAACCTAAAGTatcatttaagaactcacacTGGCGAGAAGTAG
Protein Sequence
MEVKVEDLHHSIDIKEEISIPETKPNVECKPDPVKKQFSCEICEYKCALKGRLNIHLRTHTGDKPFTCEVCGYKCTTNSALRRHIRIHTGEKPFKCEFCDYKSAQQGKVSIHMRRHTGIKPYLCSICDYKGARKENLKIHLMTHTGEKPYSCIICDFKTARKNDLTGHLRTHTGEFFACELCDYKCKQRGRLQDHTKTHTGEKPYMCDICEYKCARKQYLKIHLMTHTGEKPFTCKICDFRSLYRDDLKRHLRTHTGEPPCHSNSCSQIKTEIEEVDFKLEDLHHSVDIKEEILILESQLSEPDKKPFKCESCDYKCEHKGIFERHLRKHTEKKLLTCEVCGYKCKQKSILKVHVRIHSGDRPFSCGLCDYKGSRKNRLKQHYARTHSCEEEQYRCEVCEYKCAHKGILERHLRKHVDKKPFTCDVCGYKCKQKSILEVHARIHTGDKPFTCKICDYKGARKDRVKQHYLRTHATEKQFTCEVCGYQCTTNAYLKRHVRTHTGEKPFSCGFCNYKCAQQARLRFHIRTHTGDKPFICAVCDLKFAEKEKLKVHLRTHTGEKPFGCIICDFRSARQDDLNKHIRTHTGEKLFPCEICDYKSSRKENLKTHLKTHTGFKPFMCEICEYKCAHKHSLKNHLRTHTGEKPFGCDICDYKCTQKETSSHSNIYPQIKIEIEEVVEVKLEDLHHSVDIKDEIIIQEYQQDLECKPETSSKPFKCELCDYKCAHSGALQRHLKTHTGDKQFTCGICEYKCSRKDRLKIHLKTHTDSKAFKCEICDFTCARVEKLNLHFLRTHSSKKQFMCDVCGYKCKTNSILKRHLKIHTVEKPFRCEFCEFKCSQEVRLSIHVRAHTGEKPFTCETCDYKCASKGDFKRHLRTHTGEKPYACIICDFTSARQNDLNKHVRTHTGDKPFTCELCGYKYTTNAYLKRHLRTHSGEKPFQCEFCDYKCAEQGRLNIHVRSHTGDKPFKCENCDYRGACKGDLKRHSRTHTGEKPYACIICDFKSARRDDLNKHIRTHTGEKPFTCDTCDFRTSRKENLKYHLRTHTGEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00268806;
90% Identity
-
80% Identity
-