Cnig000879.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- dsx
- Assembly
- GCA_958510845.1
- Location
- OY294028.1:8334584-8376201[+]
Transcription Factor Domain
- TF Family
- DM
- Domain
- DM domain
- PFAM
- PF00751
- TF Group
- Zinc-Coordinating Group
- Description
- The DM domain is named after dsx and mab-3 [2]. dsx contains a single amino-terminal DM domain, whereas mab-3 contains two amino-terminal domains. The DM domain has a pattern of conserved zinc chelating residues C2H2C4 [1]. The dsx DM domain has been shown to dimerise and bind palindromic DNA [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2e-24 3.4e-20 72.5 13.4 2 47 25 70 24 70 0.97 2 2 0.85 9.2e+03 -2.5 0.0 6 17 118 129 115 130 0.73
Sequence Information
- Coding Sequence
- ATGTCGGATAATCAAGATTTTGACTCGAAATTGGAATTAAATGCGTCGAGCACTTCCTCTACACCACGCACTCCGCCTAATTGTGCGCGTTGCAGAAATCATCGCATGAAAATTGCACTTAAAGGGCATAAAAGGTACTGTAAATATCGCTCTTGCGAATGTGAAAAGTGTCGACTAACTTCCGAGAGACAGCGCGTTATGGCCATGCAAACTGCGTTGAGACGGGCACAGGCTCAGGATGAAGCTATGATGAGAACTTCGCAAAACGGTTCCGTAATCAGCCTTCCCGCAAAAAGCCCGTCACCTCTCCAAGCAATCGATCGCAGTCTCGATTGCGATTCATCGACATCGTCTCAGTGCTCTAATAACGGAAGAAATTCGATCAGAAAGATTCCTTCCATCGATGCCACACCGTCAACTACAACTGGAGTTATGGGAACAGTTgGACAAAGTACGGATTTACTAGAAGACTgccaaaaattattagaaaggTTCAAATATCCTTGGGAAATGATGCCGTTAGTGTACACAATTTTGAAGGATGCCCATGCGGACCTAGAGGAAGCTTCCAAGCGTATAGACGAAGgaAAACGGGTCGTAAACGAATATTCGAGGATGCACAATCTCAACATGTACGATGGCGTTGAACTTCGTAATTCGACACGTCAGTATggatga
- Protein Sequence
- MSDNQDFDSKLELNASSTSSTPRTPPNCARCRNHRMKIALKGHKRYCKYRSCECEKCRLTSERQRVMAMQTALRRAQAQDEAMMRTSQNGSVISLPAKSPSPLQAIDRSLDCDSSTSSQCSNNGRNSIRKIPSIDATPSTTTGVMGTVGQSTDLLEDCQKLLERFKYPWEMMPLVYTILKDAHADLEEASKRIDEGKRVVNEYSRMHNLNMYDGVELRNSTRQYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -