Cnig005616.1
Basic Information
- Insect
- Cantharis nigra
- Gene Symbol
- -
- Assembly
- GCA_958510845.1
- Location
- OY294028.1:64384614-64387821[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0006 0.34 11.5 0.0 3 38 40 74 38 76 0.94 2 2 7.9e-11 4.6e-08 33.5 0.0 1 35 136 171 136 176 0.92
Sequence Information
- Coding Sequence
- ATGCTTGAGGTTTCGTCCCAAGATTTTGGTTATAATAACTGCGAACAAAATAAGCAGTCAGATCTGCAAATAAGCGTGGATTACTTCTCTTCACGTAAATCGCCTAGATGGAATTCTGAAGACCTTCAGAGAGCTATTGAACTAGTGCGCTCTGGCGTACCTATTAAACCTTCAGCAGAGCAATGTAACATCCCTGTAATGACTCTTTGGCGACGAACTAGAGCTTTAGGTGTTATTAGCAGTCGGGCGATGACATATTCGCTAAGACCACAAAGCACTTCTAATAAATTGCACAAAAATTACGAAATGTCGGAAAACTGTTTGCAAGAAGACTATAACGATCATACTTGGCAAAATGATAGTGATGATTACCCCAGCTTACTAAAGCTTAAAACTCCAACTTGGACACAAGAGCAACTAAAAGAAGCCATCGACGCCGTAGTGAAACAGAAAATGCGTTTTACTCAAGCTTCGTCTCGTTATGGAATTCCCAAAGGAACGCTTTATGATAATATTCTCGGAAAATCTAAGCGCATGGCTGTACTCGAGGAAGCAGGTTTGACACACAACGAAGAGGCGGCCGTGTTAGAATTTTGTTGCGATGTTTCCATTTCTCCCTACAACAGACGCACAAAAAAATCTCTTCATTCGATATTAAACTTTGTCGAAAAAATTAGACGCAATCGCGACCCCGAGTTTATGTTCACCGGTCTCTCGGGATTCAGATGGTGGTGGGCATTTTGCAAAAAACACAGTATCGTTTCGCTTTTCTACGATAATGGAACTAGcaattga
- Protein Sequence
- MLEVSSQDFGYNNCEQNKQSDLQISVDYFSSRKSPRWNSEDLQRAIELVRSGVPIKPSAEQCNIPVMTLWRRTRALGVISSRAMTYSLRPQSTSNKLHKNYEMSENCLQEDYNDHTWQNDSDDYPSLLKLKTPTWTQEQLKEAIDAVVKQKMRFTQASSRYGIPKGTLYDNILGKSKRMAVLEEAGLTHNEEAAVLEFCCDVSISPYNRRTKKSLHSILNFVEKIRRNRDPEFMFTGLSGFRWWWAFCKKHSIVSLFYDNGTSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00272407; iTF_00268088;
- 90% Identity
- iTF_00272407; iTF_00268088;
- 80% Identity
- -