Clat016072.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720627.1:2428341-2429414[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.13 1.8e+02 3.1 0.1 23 46 168 190 159 193 0.80 2 4 0.0074 10 7.1 0.2 23 43 194 214 189 222 0.87 3 4 0.067 95 4.0 0.0 27 45 254 272 250 281 0.88 4 4 0.0001 0.15 13.0 0.3 20 48 303 331 291 334 0.88
Sequence Information
- Coding Sequence
- ATGGAAAATATTTGTCGAATTTGTCTGCGATCGCCGAAATTACTCTTACCGCTATTCGACGACACGCAGTTAAGTGAAAAAGTCCGAGTAATATCTTCTGTGATCATCGAAGAGTTCGATGGTTTTCCCAATACTGTTTGTGCTGATTGCATTATAAACGTGAACATATCGTATAATTTCAGACTTGTAGTGATAAACAGCGATGTAGAATTGAAACGACGCCTGACGGACAGTGCGACCGAGAGTGTCGAGGTGATCGAAACAGATGGAGAGCCGTTGTTAAGAATAAGTGAAATGATTAAGGTGGAACAAGATGATTTAGATTTAAGACGAAGTGACGGAGAGAACGAAAGGGTAATGGTGGAAGAAAGGGAAATTAAGCAGGAGGAAGTTTCGCACTACGAGCCGAAGAAGCGGAAGTATAAATGCAAGAAGTGCGACTTTGTCACGGAGCATTTTGCGCTTTACTTCAAACACGATCGTCGCGTACATTATAAACCACAAACTCGTGTTTGTAGCATTTGCGGGAAGGTAATAGGAATaagcaattttacaaaacatttgAGGATTCATGACGCGACTCCGAGTAAGTGCGACGTCTGCGGAAAGATGTGTAGGAATAGCGAGTCGTTACGACACCACAAATTTGTGCACAAGGGTTCAAAAATATGTGAGTACTGTGGCAAATCGTTTAACTACCAGTCGAGTTACCGAGTTCACGTGAAAAAATACCATAAAGGTGGACTAAAGAAGTTATTTTGCACTTTTTGTGACAAAGTGTTTTTTCAAGGCAACGATTTGAAAAGGCACATGCAGAAGCACACGGGTGAAAGACCACATATATGCGAATTTTGTAAGAAAGGGTTTTCAAGCACCAATGCGTTGAAAACGCACAAACGACAACACACTAATGAAACACCCTATGTGTGTGAGCTGTGCGCAGCGGCATTCAAGCAGAGAGTTTCGTTGCGAAACCATCTGAGTACGAAGCATCCTGGATCGGgaataactttaaattga
- Protein Sequence
- MENICRICLRSPKLLLPLFDDTQLSEKVRVISSVIIEEFDGFPNTVCADCIINVNISYNFRLVVINSDVELKRRLTDSATESVEVIETDGEPLLRISEMIKVEQDDLDLRRSDGENERVMVEEREIKQEEVSHYEPKKRKYKCKKCDFVTEHFALYFKHDRRVHYKPQTRVCSICGKVIGISNFTKHLRIHDATPSKCDVCGKMCRNSESLRHHKFVHKGSKICEYCGKSFNYQSSYRVHVKKYHKGGLKKLFCTFCDKVFFQGNDLKRHMQKHTGERPHICEFCKKGFSSTNALKTHKRQHTNETPYVCELCAAAFKQRVSLRNHLSTKHPGSGITLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294418; iTF_00269175; iTF_01292919; iTF_00271897; iTF_00270490; iTF_00273113;
- 90% Identity
- iTF_00269175; iTF_00271897; iTF_00270490; iTF_00273113;
- 80% Identity
- iTF_00270490;