Clat022050.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720628.1:32856246-32857376[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.032 45 5.0 0.1 23 52 100 129 90 130 0.86 2 9 0.28 4e+02 2.0 0.2 21 45 126 150 124 157 0.76 3 9 0.089 1.3e+02 3.6 0.0 25 47 158 180 153 187 0.84 4 9 0.049 69 4.5 0.0 11 44 199 233 193 238 0.75 5 9 0.0025 3.6 8.6 0.0 21 52 238 269 234 271 0.87 6 9 0.0065 9.2 7.2 0.3 21 47 266 292 263 297 0.85 7 9 0.061 87 4.1 0.1 23 46 296 319 290 326 0.83 8 9 0.16 2.2e+02 2.8 0.1 23 48 324 349 321 353 0.73 9 9 0.0035 5 8.1 0.5 21 45 350 374 347 376 0.85
Sequence Information
- Coding Sequence
- ATGGATAAAGTGGAACTGGTAAAACTATCGAacgaattacaaaatttgaaagaaattaaaaacgcTTTCCAATCTTCATGCAATGCAGACCCAATTAAAATCGAAGTGGATGACgtgcaaattaaattagaagaattGCATCATTCAATAGACATTAAGGAGGAAACTACAATTTTGGAATCTCAACTAAAGGGCGAATGTAAAGctcaaatttgtaaatacgaATGTGGAGAGTGCAAGCTGatatttagcaaaaaattacaattcgaAAAGCATACAAAAATTCATCCGGACTCGAAACCGTTTGCCTGCACGATGTGCAAGTTTAAGTGTTCGCAGAAAGGAAATCTGAAAGTTCATCTGAGAATTCATACTGGAGAAAAGCCGTATGCTTGTAAAATCTGTGATTACAAATGTGCACATAAAGCAAGTTTAAACCTTCATTTAGAAAGCCATACCGGAAAAAAAAGGTTTACGTGTGACATTTGTGACTTTAAATGTTCACAAAAGGGAAACTTGACATTTCACCTGAAAACTCATACCGGAGAGAAACCGTTCGCTTGTGAATTTTGCGATTACAAATGCAGACACAAAGGTCACATGAAAGATCATTCGAGAACTCAcaccggcgagaaaccatttgcgTGTAAAAtgtgcgattataaatgcATACAAAAAGGATACTTGAAGGATCATCTGAGAACGCATACCGGCGAAAGACCGTTCGCGTGTGAAGTTTGtgggttaaaattttcacaaaaacgAAATTTGACTTTTCATATCAGAATTCACACCGGAGAGAAACCATTCGTGTGCGAAATTTGTGCGCGCAGATTTTCGCATAACCGAAATTTAACACTTCATTTAAGAACCCATACCGGCGTGAAGCCGTTCAcatgtgaaatttgtaataataaattttcacaaagaGGACATTTGAAAGATCACGTAAGAACCCACACCGGCATGAAACCATAtgcatgtgaaatttgtgattacaaaACGGCACGAAGGGAACATTTAAaaagacattttaaaatcCATACCGGTGAAAAGCCGTTCgcgtgtgaaatttgtgattacAGGTGTTCACGGAAGGAAAATTTAAGACAACACCTAAAAACtcattaa
- Protein Sequence
- MDKVELVKLSNELQNLKEIKNAFQSSCNADPIKIEVDDVQIKLEELHHSIDIKEETTILESQLKGECKAQICKYECGECKLIFSKKLQFEKHTKIHPDSKPFACTMCKFKCSQKGNLKVHLRIHTGEKPYACKICDYKCAHKASLNLHLESHTGKKRFTCDICDFKCSQKGNLTFHLKTHTGEKPFACEFCDYKCRHKGHMKDHSRTHTGEKPFACKMCDYKCIQKGYLKDHLRTHTGERPFACEVCGLKFSQKRNLTFHIRIHTGEKPFVCEICARRFSHNRNLTLHLRTHTGVKPFTCEICNNKFSQRGHLKDHVRTHTGMKPYACEICDYKTARREHLKRHFKIHTGEKPFACEICDYRCSRKENLRQHLKTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00268902;
- 90% Identity
- iTF_00268902; iTF_00270232;
- 80% Identity
- iTF_00270232;