Clat001824.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720624.1:19170301-19171939[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0046 6.5 7.7 0.0 23 44 90 111 82 118 0.89 2 11 1.6 2.3e+03 -0.5 0.0 27 44 150 167 147 173 0.83 3 11 0.0021 3 8.8 0.1 21 46 173 198 164 205 0.87 4 11 0.26 3.7e+02 2.1 0.0 25 44 206 225 199 233 0.84 5 11 0.058 82 4.2 0.0 21 44 230 253 227 260 0.89 6 11 0.17 2.5e+02 2.7 0.0 23 44 260 281 254 290 0.84 7 11 1.4 2e+03 -0.3 0.0 21 43 286 308 283 313 0.71 8 11 0.028 40 5.2 0.1 22 44 315 337 311 346 0.84 9 11 0.76 1.1e+03 0.6 0.1 22 44 343 365 337 374 0.76 10 11 0.22 3.1e+02 2.3 0.3 21 43 398 420 389 425 0.80 11 11 0.28 3.9e+02 2.0 0.0 21 43 426 448 421 455 0.79
Sequence Information
- Coding Sequence
- atgttaaaagtaaaGGAAGAACCGCAGGAGGCTGACGAATACTTGATTACTTTCTCGAATGAATTGGaattggaacaagaatatgaaattaaaattgaagaggaagattttcaattaaaacccGAAGAGTTGTATAATGAagtgtatataaaaaatgaactgCGCAACTTGGGTGGCGAAGAGGTAGAAGACAAAGATTATGAAGTTTCAGAAGATCACTCGACACTAGAAGAATCATCACTTGACTCCGACTCCATCGAATTAAagAAACCATTTGCTTGCGATATTTGCCATAgcaattttacacaaaaatgcAGTTTGAAAAGACACATGTTAATTCATACTGGAGAACGAAGGTTCAGCTGTGAATTTTGCTCATCTACATTTTTTCGTAAATCTGAACTAAACACTCACACTGCAATACATACTGGAGATTATCGATACAATTGTGATATTTGCGAAGCTAAATTTACACGAAGGGGTGATTTGAGAAGCCATAAATTAACTCAACATACCGATGAAAAACCATACACTTGTAGTATATGCAAATCAAAGTTTTCCAAGAAAAATGCTTTAAGTAGACACATGTCGGTTCatgaaaaaggaaaaaaaacgATCAGTTGTGGTATATGTCATTTGCAGTTATCCGAAAACAGCAGCTTAAAGAGGCACATGTGGACTCATACCGGAGAAAAACCTTTTGATTGTGACATTTGTCACTCGAAGTTTTcgttaaaaagtaatttgaataAGCACATCCTGACTCACAATAAAGGAACACCGTTTGCATGTGAAATTTGCAAATCGGTATTCTTAGAGAAATACCTCTTGAAACAGCACCTTTTAACGCATGCTGGAGAGAAGCCCTTTGGTTGTGAAATTTGTTCCTTTCGATTTCCACGTAAAAGTGACCTGAACAGTCATCTGCTAACTCATACAGAAGAAAAATCATTTGTGTGTGAAATTTGTCAAGCTTCGTTCACactcgaaaaatatttacggCGCCATAAACGAACCCACACTGGAGACAAACCATTCTGTTGCAACATTTGcccttcaaaatttttacggaatAGTGACTTGAAGAATCACATTCTCACGCATACCGGAGTAAAACCCTACGAATGTCACTTATGTCAATTAACGTTTTCGCTTGAAAGTTATCTTAAAAAACATGTACGAACGCATACAGGGGAAAAACCGTACTGTTGTCAACTATGCCCTGCAAAATTTTTGCGAAAGAGTGACCTGCGAAATCATAGGGTGACACACACTGGAGAGAAACCTTTTAGTTGTGAAATTTGCAAATcaaagttttcatttaaaagtagCATAAAAAGACACAAGCTGACCCACATGAGAGAAAAGCAGCTGAGTTGTGGTACGTGA
- Protein Sequence
- MLKVKEEPQEADEYLITFSNELELEQEYEIKIEEEDFQLKPEELYNEVYIKNELRNLGGEEVEDKDYEVSEDHSTLEESSLDSDSIELKKPFACDICHSNFTQKCSLKRHMLIHTGERRFSCEFCSSTFFRKSELNTHTAIHTGDYRYNCDICEAKFTRRGDLRSHKLTQHTDEKPYTCSICKSKFSKKNALSRHMSVHEKGKKTISCGICHLQLSENSSLKRHMWTHTGEKPFDCDICHSKFSLKSNLNKHILTHNKGTPFACEICKSVFLEKYLLKQHLLTHAGEKPFGCEICSFRFPRKSDLNSHLLTHTEEKSFVCEICQASFTLEKYLRRHKRTHTGDKPFCCNICPSKFLRNSDLKNHILTHTGVKPYECHLCQLTFSLESYLKKHVRTHTGEKPYCCQLCPAKFLRKSDLRNHRVTHTGEKPFSCEICKSKFSFKSSIKRHKLTHMREKQLSCGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01292252;
- 90% Identity
- iTF_00271631;
- 80% Identity
- iTF_00270220;