Clat022733.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720628.1:37825901-37829660[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.5 7e+02 1.2 0.1 21 44 152 175 146 179 0.88 2 9 0.022 31 5.6 0.0 21 52 180 211 176 212 0.83 3 9 0.5 7.1e+02 1.2 0.0 22 45 209 232 205 242 0.87 4 9 0.11 1.6e+02 3.3 0.0 16 31 260 276 251 297 0.71 5 9 0.0082 12 6.9 0.1 21 46 321 346 307 353 0.85 6 9 0.38 5.4e+02 1.6 0.0 21 47 349 375 345 380 0.80 7 9 0.17 2.3e+02 2.7 0.3 21 35 377 391 373 409 0.70 8 9 0.3 4.2e+02 1.9 0.0 21 44 433 456 419 464 0.80 9 9 0.00031 0.44 11.5 0.0 18 45 485 513 481 518 0.85
Sequence Information
- Coding Sequence
- ATGGAGGACGTGGAAATCGGATTGGAAGGTTTGCACCATTCGATTGACATTAAAGAAGATGAATCGGTTTCAGAAAACCAACCGGATAGTAACGAGGAGACTCCATACCTTGGGAATACCCCGTCCCGAATTAAGACAGAAGAAGAAGTGGTAATCAAGAAGGAAGATTTGAATCCGCCCATCGAAATCAAAGACGGGACCTCGAAACCGGAATCCTGGCTGGATAGCAAGTCCAATGGGATAAAACTGAAACGTAAAGAAACACCTGAGTATGCAAGTATTCCCTTTGTAATCAAGAAGGAAGAAGAAATGGAAATCAAGTTGGAAGATTTGCACCATTCCATTGATATTAAGGAAGAAACAACTTTGGAAAATCAACCAGAGACGGAATTTAAACCGCAAACAAGCAGTACAccattttcatataaaatcaGTCCGATAAAAACTCTCACTGGTGAGAAACCATTTGCGTGTGTTCTCTGTGACTACAAATGTGCCCAGAGGGGCCAATTGACGCGACATTTTAAAACCCACACTGGAGAGAAGCCGTTTACATGTGAGAtttgtgataataaattttcgcgTAAGAGTACACTGCAAATTcatttaagaattcataaAGGTGATAAACCATTTGCGTGTGAACtctgcgattataaatgttcgcagaaaggaaatttcaaaactcaTTTAAGAACTCACACAGGCGAAAAACGGTTtgcatgtgaaatttgtgattataaatgtacaCACAAAGGAAGTTTGGACGATCATTTAAGAACGCATACTACTGACGATAAGCCGTACACTTGCGAAATTTGCGATTACAAATATGCACATAAAAGCAGTTTTCAAAATCACTTAAGAACTCATACAGccgagaaaatatttaaatgcggTACATGTGAGTATGAAAGCGCTAAGAAAGCGGATCTTACAGTACACTTAAGAACCCATACTGGGGAGAAACCATTTACGTGTGAAATTTGCGGATGCCATTTTGCCCATAAGAGAAGTTTAACTATTCATTTAAGAACTCACACCGGCGAGAAGCcatttaaatgtgaaatatgCGGTTATCAAAGTGCACAGAAGGGAGATTTAACGATTCATTTGAGAATACACACCGGGGAAAAACCATATACATGTGATATTTGCGGTTATAAATGTGCTCATAAGGGAAGTTTAACTTCTCATTTAAGAACTCACACTGGAGAGAAGCCTTTCAAATGTGAAATGTGCAGCTACGAAAGTGCTAAGAAAGGGGACTTGACAATTCATGTAAGAACTCACACTGGCGAAAAGCCGTTTGCATGTGgaatatgcaattataaaaGTGCGCATAAAGTAAGTTTAAGAATTCATTTAATAAGTCATACAGGCAAGAAACCTTTTAGATGTGGAATGTGCAACTATGGATGTGCACTGAAGGGAGACTTAACAATTCACTTAAGATCTCATAGCGGCGAAAAGCCATATTCTTGTGACATCTGTTACCTTAAATTTGCCCGCAAAAGGGATTTAACTGTTCATTTAAACACCCACACTGCCTTGCAGGAAAGTGTTggtatttga
- Protein Sequence
- MEDVEIGLEGLHHSIDIKEDESVSENQPDSNEETPYLGNTPSRIKTEEEVVIKKEDLNPPIEIKDGTSKPESWLDSKSNGIKLKRKETPEYASIPFVIKKEEEMEIKLEDLHHSIDIKEETTLENQPETEFKPQTSSTPFSYKISPIKTLTGEKPFACVLCDYKCAQRGQLTRHFKTHTGEKPFTCEICDNKFSRKSTLQIHLRIHKGDKPFACELCDYKCSQKGNFKTHLRTHTGEKRFACEICDYKCTHKGSLDDHLRTHTTDDKPYTCEICDYKYAHKSSFQNHLRTHTAEKIFKCGTCEYESAKKADLTVHLRTHTGEKPFTCEICGCHFAHKRSLTIHLRTHTGEKPFKCEICGYQSAQKGDLTIHLRIHTGEKPYTCDICGYKCAHKGSLTSHLRTHTGEKPFKCEMCSYESAKKGDLTIHVRTHTGEKPFACGICNYKSAHKVSLRIHLISHTGKKPFRCGMCNYGCALKGDLTIHLRSHSGEKPYSCDICYLKFARKRDLTVHLNTHTALQESVGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00270157;
- 90% Identity
- iTF_00270157;
- 80% Identity
- iTF_00270157;