Clat019049.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720628.1:8350345-8352021[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9.7 1.4e+04 -2.9 0.0 40 49 62 71 56 73 0.74 2 10 0.44 6.2e+02 1.4 0.0 23 52 151 180 141 182 0.83 3 10 1.4 2e+03 -0.2 0.0 21 44 205 228 200 233 0.78 4 10 0.055 78 4.3 0.0 21 47 233 259 225 264 0.84 5 10 0.077 1.1e+02 3.8 0.3 21 46 261 286 258 295 0.70 6 10 1 1.5e+03 0.2 0.0 21 47 289 315 285 320 0.74 7 10 0.012 17 6.4 0.2 21 46 317 342 311 348 0.90 8 10 0.016 23 6.0 0.3 22 46 346 370 341 374 0.88 9 10 2.4 3.3e+03 -0.9 0.0 27 49 378 400 375 403 0.83 10 10 9.8e-05 0.14 13.1 0.0 21 52 400 431 396 433 0.89
Sequence Information
- Coding Sequence
- ATGTTCCGACGCAAAAATccagatataaaattaaacgaaaaccATGGCAACGCCATAAGAACTTACCATGACACAGCTACTCGTGAAATCGAGCAATCACCATCAGCAGAAGAAGAAACGACCGAAAAAGACAGGAACAGCTCTGCAACACAACTATCAATTAACATGCAATCTTCAGAAGGAATAGAATATAAGTTGGAACCACGTCATTTTatcgacattaaagaagaaCCTTCGTTATCACTAGAACAAGAAGTCCAAAGTCTACAAGGATTACATTCTGTTGATGTTAACGAGCAACTCCGCATCAAGCCTGAAGTTAAAATGGAGGTAGAAGATCATATCATTTATATTACCGAAAACAATTCATCGACTCGAAAGTGCCATTCTGGGAACAATCAATTAGTGTTTACCAACTGCAAATCAAAAGGAAAAACATCATTAAAACTTCAGGCATTTATGTGCGAAGTTTGTGGTCTTAAACTTAGAAgcaaatcaagtttaaaaagcCACTTGAGAATCCACACGGGCGAAAAACCGTTTTCCTGTGAATTTTGTGATAATAAATTCTCGGATAAAGGAAAGCTGAATTTGCATCTCAGAATTCATACCGGCGAAAAACCGTTTATTTGCAAAGTTTgtcaatttaagttttcgcGTAAAGGAAGTTTGACGAAACATTTGAGAACTCATACGGGAGAAAAACCATACGGCTGCCATATTTGCGGTCacaaatttgcattaaatGTGAATTTGAAACAACACTTGATAATTCATacgggcgagaaaccgtttgctTGCcaaatttgcgattataaaagttCGCGAAGGGAAACTCTGAGCAGACACTTGAAAAATCACACCGGGGAAAAACCATTTGCGTGTAAATTGTGCGAGTATAAATGTTTAACTGCCAAGAGACTCAACGTTCATTTAAGAATTCACACTGGGGAAAAACCGTTCGCGTGTGAGGTTTGCGCTTGTAAATTTTCGGAAATAGGAACTTTGCGCAGGCATCTGCGAATTCACGCAGGcgaaaaatcatttgaatGCGAAATTTGTTGCTCCAAGTTTAGGCACCAATCGTCGTTGAAGAAGCACTTAAAACTCCACATGGGTGAAACATTTGAGTGCACAATTTGTGATAAAAAGTTTTCGCAAAAATCGTGTTTGAACgtacatttgaaaattcacaGCGGGGAAAAGCCGTTTGAGTGCGGGATTTGTAGCTCCAGCTTCTCACAAAAAGGAAACCTTCGGGATCATTTAAGAATTCATACGGGCGATAAACCGTTTGTCTGCGAaAATTTTGACATCGAAGACAAACGCATTGGCTATTATTCCACTAATCGTATTGGTGGAAAATGA
- Protein Sequence
- MFRRKNPDIKLNENHGNAIRTYHDTATREIEQSPSAEEETTEKDRNSSATQLSINMQSSEGIEYKLEPRHFIDIKEEPSLSLEQEVQSLQGLHSVDVNEQLRIKPEVKMEVEDHIIYITENNSSTRKCHSGNNQLVFTNCKSKGKTSLKLQAFMCEVCGLKLRSKSSLKSHLRIHTGEKPFSCEFCDNKFSDKGKLNLHLRIHTGEKPFICKVCQFKFSRKGSLTKHLRTHTGEKPYGCHICGHKFALNVNLKQHLIIHTGEKPFACQICDYKSSRRETLSRHLKNHTGEKPFACKLCEYKCLTAKRLNVHLRIHTGEKPFACEVCACKFSEIGTLRRHLRIHAGEKSFECEICCSKFRHQSSLKKHLKLHMGETFECTICDKKFSQKSCLNVHLKIHSGEKPFECGICSSSFSQKGNLRDHLRIHTGDKPFVCENFDIEDKRIGYYSTNRIGGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271606;
- 90% Identity
- iTF_00271606;
- 80% Identity
- iTF_00270270;