Basic Information

Insect: Cantharis lateralis
Gene Symbol: -
Assembly: GCA_963170105.1
Location: OY720628.1:36278843-36280435[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4.3 6e+03 -1.8 0.0 27 45 64 82 58 91 0.82

2 13 2.9 4.1e+03 -1.2 0.0 26 48 91 113 81 117 0.79

3 13 0.00052 0.73 10.8 0.0 21 45 114 138 110 142 0.92

4 13 0.018 26 5.8 0.0 21 43 142 164 138 173 0.86

5 13 0.37 5.2e+02 1.6 0.1 21 45 170 194 167 201 0.81

6 13 0.25 3.5e+02 2.2 0.1 21 44 198 221 187 225 0.78

7 13 0.13 1.8e+02 3.1 0.1 21 44 226 249 223 255 0.90

8 13 0.11 1.5e+02 3.3 0.0 21 44 282 305 278 310 0.81

9 13 0.016 22 6.0 0.0 21 47 310 336 306 343 0.85

10 13 0.47 6.6e+02 1.3 0.0 22 43 367 388 358 395 0.84

11 13 1 1.5e+03 0.2 0.1 22 50 395 423 390 424 0.83

12 13 0.05 71 4.4 0.0 21 44 423 446 414 451 0.91

13 13 0.23 3.3e+02 2.3 0.2 21 32 496 507 485 525 0.74

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4.3	6e+03	-1.8	0.0	27	45	64	82	58	91	0.82
2	13	2.9	4.1e+03	-1.2	0.0	26	48	91	113	81	117	0.79
3	13	0.00052	0.73	10.8	0.0	21	45	114	138	110	142	0.92
4	13	0.018	26	5.8	0.0	21	43	142	164	138	173	0.86
5	13	0.37	5.2e+02	1.6	0.1	21	45	170	194	167	201	0.81
6	13	0.25	3.5e+02	2.2	0.1	21	44	198	221	187	225	0.78
7	13	0.13	1.8e+02	3.1	0.1	21	44	226	249	223	255	0.90
8	13	0.11	1.5e+02	3.3	0.0	21	44	282	305	278	310	0.81
9	13	0.016	22	6.0	0.0	21	47	310	336	306	343	0.85
10	13	0.47	6.6e+02	1.3	0.0	22	43	367	388	358	395	0.84
11	13	1	1.5e+03	0.2	0.1	22	50	395	423	390	424	0.83
12	13	0.05	71	4.4	0.0	21	44	423	446	414	451	0.91
13	13	0.23	3.3e+02	2.3	0.2	21	32	496	507	485	525	0.74

Sequence Information

Coding Sequence: ATGAATAAGCTGGAATTATCGGAAGAATTTGAAAGCAccattaaagaaattaagacGGAGCAGGTCGAAGTGTTGGAAATCAAGCTAGAAGACCTACATcattcaattgaaattaagGAAGAGATATTTATAAACGAAACCCACCAGGAACCAAGTTACAAAACGAAGAACACCTGCAAACAATTTGAATGCCGGGTATGTAATGCAACATTTACGACCAAATCGCAACTAAAACAGCATGCAAAATTTCATTCCGCCACGAAGCAATTTTTGTGCACAATTTGCGGCCGCACGTTTTCGCTCAAGACTTCGCTGAGGAACCACATTAAAATACACACCGGTGAGAAACCTTTTGCTTGCGAAATCTGCGACTTCAAAACGCGGCAAAAGGGGAATCTAAAACACCACTTAagaactcataccggcgagaaaccgtttgctTGTAAACTTTGTGATTTCAAAAGTGcgcaaaaaagaaatttgaaagctCATCAGCTCAATCACACCGGCGAGAAGCCGTTTGCGTGCCATATTTGCAACTTTAAGTGTTCACAGTTGGTAACACTGAAAGACCACATTAGAACTCATACGGGTGAAAAACCATTTGCCTGTGATATTTGTGATTTTCGATGCGCTCgcaaaggaaatttaaaaatccatatactaactcataccggggaaaaaccgttgCAATGCgaaatttgcgattttaaatgtctGCATTCGACCACGCTGAGAAATCACATGGTAACTCACACAGGGGAGAAACGATTTGCGTGcgaattttgcaaatttcgaTCGGTACACAAGGCAAGTCTGAAATATCATCTGGTTACTCACACTGGGGAGAAACCGCTCTCTTGTGATATTTGCGATTTCAAGTGCATTCAACAGGGAAGTTTGAAAAACCACCTACtaactcatactggcgagaaaccatttgcctgcaaaatttgcaattataaaagttCGCAAAAGGGAAACTTGAAGATTCATTTGATTACTCATTCCACTGAGAAACCGTTTAAGTGTGAAACCTGCAATTTTCGATGTTCGCATTTGACAAGCCTGAAAAATCACATGGTAACCCACAGCGGCCAGAAGCCGTTTGCCTGCGAACTCTGCGATTacaaaagtttccaaaaaggaaatttgagAACTCATCAACTGACTCATTCCAACGAGAAGTCTTTCGTGTGCAAAATTTGTGACTACAGATGTTCACATTTAACTACGTTGAAAAAACACACCATGCTGACTCATGTTGCCGAGGAGCCGTTTGCCTGCGGAGTTTGCGATTTTAAGAGTGCTCAGAAGCGGACCCTGAAAGCTCATCTGCTAACTCATGCTGTCGAGAATGAAATGTCGAtagataaatcaattttgaaggATCGAACCACCGGAGAGAAATCTTTCGTTTGTAATGCGTGCGACTATAAAACAGACAAAAAAGATCAGTTGAAGTGTCATTTGAAGACTCACAGTGCTGAGCAATCGTTTACCTGCGAAATTTGCGGTTTCCGATGTTCCCGAAAGGCCTATTTGAAAACCCACATACTAAGTCATTCTCGGAAGAAATCTCTCGagagttaa
Protein Sequence: MNKLELSEEFESTIKEIKTEQVEVLEIKLEDLHHSIEIKEEIFINETHQEPSYKTKNTCKQFECRVCNATFTTKSQLKQHAKFHSATKQFLCTICGRTFSLKTSLRNHIKIHTGEKPFACEICDFKTRQKGNLKHHLRTHTGEKPFACKLCDFKSAQKRNLKAHQLNHTGEKPFACHICNFKCSQLVTLKDHIRTHTGEKPFACDICDFRCARKGNLKIHILTHTGEKPLQCEICDFKCLHSTTLRNHMVTHTGEKRFACEFCKFRSVHKASLKYHLVTHTGEKPLSCDICDFKCIQQGSLKNHLLTHTGEKPFACKICNYKSSQKGNLKIHLITHSTEKPFKCETCNFRCSHLTSLKNHMVTHSGQKPFACELCDYKSFQKGNLRTHQLTHSNEKSFVCKICDYRCSHLTTLKKHTMLTHVAEEPFACGVCDFKSAQKRTLKAHLLTHAVENEMSIDKSILKDRTTGEKSFVCNACDYKTDKKDQLKCHLKTHSAEQSFTCEICGFRCSRKAYLKTHILSHSRKKSLES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00271593;
90% Identity: iTF_00270171;
80% Identity: iTF_00270171;