Clat022718.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720628.1:37707819-37709809[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.1 4.4e+03 -1.3 0.1 23 44 77 98 74 106 0.75 2 12 0.11 1.6e+02 3.3 0.2 21 34 103 116 97 129 0.71 3 12 0.11 1.5e+02 3.3 0.3 18 44 127 154 115 159 0.77 4 12 0.0019 2.7 9.0 0.0 21 47 159 185 155 192 0.85 5 12 1.3 1.8e+03 -0.1 0.0 21 32 187 198 183 218 0.66 6 12 0.024 34 5.4 0.3 21 44 215 238 212 242 0.85 7 12 2.7e-05 0.038 14.9 0.0 21 47 243 269 240 275 0.87 8 12 0.22 3.1e+02 2.4 0.1 21 45 271 295 267 304 0.73 9 12 4.2 5.9e+03 -1.7 0.1 21 36 299 315 294 332 0.68 10 12 0.022 32 5.5 0.1 21 44 355 378 343 388 0.71 11 12 3.8 5.4e+03 -1.6 0.0 21 32 383 395 379 408 0.73 12 12 0.006 8.4 7.4 0.0 21 45 411 435 404 441 0.87
Sequence Information
- Coding Sequence
- ATGGAAGATCCGTGCCAATCCACTGGTTCTTTCCAAATTAAGACAGAAGAGGAAGAATCGGGATTTAATGAGGAAACTTTGCACCATTCCATAGACATTAAGGAGGAGATATCAGTTTTCGAATCTCATCCGGGCAAAGAATGCAAACCGGAAGCATCCGGGAATCCATTTATGTGCAGTATATGGGAATACAAAGGTGATATAAAGGTTCCGTTAAAAACAGACAAAAAGCCGTTTATGTGTGTGATCTGTGGTTACAGCTGTAAGCAAAAGGGTGTTTTAGAAATTCACGTTAGAACTCATACAGGCGAAAAACCTTTTACTTGCGATATCTGCGACTATAAATGTGCGCACAAAGGAAGTTTAAAGATCCATTTGAGAAGTCACacgggggaaaaaccgttcACATGCGAAACTTGCAATTTCAAGTGTGCGCGTAAAGAGGTTTTACGGATTCATCTTAGAACTCACACTGGTGAGAAACCATATACATGCGAGATCTGCGGTTTCAAATGCACGCAAAacggaaatttcaaaaatcacctACGAACCcatactggcgagaagccGTTCATGTGTGATATTTGTGACTACAAAGGTGCATCCAGAGGGGGTTTACACACCCATTTGAAAATTCACACCGGGGAAAAACCATTTATGTGTGAGCTGTGCGATTACAAATGCGCACGCAAGTCGCATCTACGAAGACATTTAATATCCCACacgggggaaaaaccgtttaCGTGTGAAATTTGCGGATTGAAATGTACCCAaagcgaaaatttaaaaaatcacttaaAAACTCACACCGGCGAAAAGCCATTCATATGTGAAATTTGCGGATATAAATGCATACAAAAGGCATTTTTGAAACTTCACTTACGAACccatactggcgagaaaccgtaTTCTTGCgaattttgtgattataagTGTGCGCGTAAGGGAGTTTTAAACATACATTTAAGAACTCACACCGGGGAAAAACCATTTATTTGCGAGTTTTGCGACTACAAATGCGGACACAAGGGAAGTTTCAAGATTCATTTGAGAACTCATACTGGAGAAAAACCGTTCACGTGCGAAATTTGCGGATACAAATGCATACAGAAAgctgttttaaatattcacttaagaactcataccggcgagaagccGTTTTCATGTAAACTTTGCGACTACAAATGTGCACGTAAGGGAAATATGGGGATTCACGTAAAAACTCATACAGGGGAAAAACCGTTTACGTGTGAAATTTGCGGTTACAAGTGTTTACAAAAGGGAAACTTcaaaagtcatttaaaaacCCATGCTGCcgggaaataa
- Protein Sequence
- MEDPCQSTGSFQIKTEEEESGFNEETLHHSIDIKEEISVFESHPGKECKPEASGNPFMCSIWEYKGDIKVPLKTDKKPFMCVICGYSCKQKGVLEIHVRTHTGEKPFTCDICDYKCAHKGSLKIHLRSHTGEKPFTCETCNFKCARKEVLRIHLRTHTGEKPYTCEICGFKCTQNGNFKNHLRTHTGEKPFMCDICDYKGASRGGLHTHLKIHTGEKPFMCELCDYKCARKSHLRRHLISHTGEKPFTCEICGLKCTQSENLKNHLKTHTGEKPFICEICGYKCIQKAFLKLHLRTHTGEKPYSCEFCDYKCARKGVLNIHLRTHTGEKPFICEFCDYKCGHKGSFKIHLRTHTGEKPFTCEICGYKCIQKAVLNIHLRTHTGEKPFSCKLCDYKCARKGNMGIHVKTHTGEKPFTCEICGYKCLQKGNFKSHLKTHAAGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271590;
- 90% Identity
- iTF_00270189;
- 80% Identity
- iTF_00270189;