Clat016403.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720627.1:5367528-5371484[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.049 69 4.4 0.2 24 52 86 114 80 115 0.82 2 10 0.65 9.2e+02 0.9 0.0 23 47 113 137 109 142 0.81 3 10 0.00017 0.25 12.3 0.0 21 52 139 170 135 172 0.89 4 10 0.00049 0.69 10.8 0.1 22 51 168 197 165 199 0.86 5 10 0.19 2.7e+02 2.6 0.3 21 44 195 218 192 227 0.73 6 10 0.086 1.2e+02 3.7 0.1 21 52 223 254 215 256 0.81 7 10 0.79 1.1e+03 0.6 0.1 21 44 251 274 249 284 0.61 8 10 8.6 1.2e+04 -2.7 0.0 21 30 279 288 273 290 0.80 9 10 0.0008 1.1 10.2 0.0 21 45 307 331 298 334 0.88 10 10 0.0085 12 6.9 0.2 20 47 334 361 331 368 0.87
Sequence Information
- Coding Sequence
- atggacattcaagatttaaaagaaatagaagTGAAGAAATTTGTGCATATCAAACAAGAACCCGACAATGAAGTTGATGTTAACAACGgtgaattcataaaatttgaagttcaaGATAATATAAACGAGATGAAATGCAAATTCGAAGAATTACTACATCATTCCGTTAACATCAAAGATGAAAATACATCAACTGTATCTTCAGAGACGACGCTCAAAATTCTAACCTCTGAAATTGCTCGAAACGATAGACCTCCATTTGTATGCAAACGCTGCAATACTACATTCACTCGAAAATCGAACTTGAAAAGACACTTGCTAATTCACACGGGCGTAAAACCCTACGAGTGCAGTATTTGTAAAGCAAAATTTAGCGAAAAATCCAAGGTAAAAATCCACCTAACAATTCACACTGGGGAAAAACCATTCGAATGCGGCGTTTGTCATTCGAAATTTAGACAGAAATCTACCTTGAAAAAGCATTTACAAATTCACACCGGCGATAAACCCTACCTCTGTCACATCTGTGACTCGAGATTTGCTCAAACCTCAAATTTACAACGGCATTTAAAATGGCATGCGAATGAGAAGCCCTTCGCATGcgaaatttgcaattacaaatgCATCGAAAAGAAGCGCTTGCAGATTCATTTAAGAAGCCACACCGGTGAAAAACCGTACGCGTGTGAAATGTGCGATTATAAATCTGCCGGGAGGGAAAATTTGAGCAGGCACGTAAGAATACATACTGGCGAAAAACCCTACGTATGTGAAATCTGCAGTTACAAATGTTCAGACAAGACTAGGTTGTCGATTCACTTAAGAACCCACTCCGGTGAAAAACCTTTTGTTTGCCAGGTTTGCGGTTTAAGATTTTCACTCAACGCAATCTTGAAATGCCACGCAAGAGTTCATACAGGCGAGACTCCATTCTCGTGTCAGATTTGTGGTGCCAAGTTTACACAAAAAGGAAGCCTGCGAAAACATTTAAGAGCACACAGAAGTGAAAAGCGGTTTTCCTGCGAGATTTGCAACACAAAGTTTTCGCAAAAAGTGAATTTACAAGTTCATTTAAGGATTCATACAGATGCCAGTTCGGCCGTACCCGGGGAGTCTTTAGAAGATTCCCTGCTGGAAGGCAACACTGTAGGGTCTCGTCATAAAAACACAAGCCCTGCGATGCGGAGAGAAAACGCCGCAAATAGGCAAAATTGCAGAAGGCAGTGGCGGGTTCAGTCACCTACAAAGAGGCAGCATATTGTTGAGACTCATCTCAACCAAGCCCTGGACAGAACCATTTTGGCGACTCAAGAAAGGGCAATGGTAGTACCCATATTTGCGGGATTCCGTTGCACGGAGCAAATCCTTAGGGTTACCTGCGACGGACAAACGATGAAACAGGTAGCTGCAGAGCTTGAACTCAAGGGGAGCCTAGGAGGAATCACAGACAGCAGCTCCAATTCCATCAGAAGACCCTACCACCAAGGAAGTCTAATGGCTGCTCTTGGAACACAACAGAGCGGCTATGGGGATGGCCAAAAGGACGTAATTTTACCATCCATCTACCACCCCATTGATTCGCTGGAACTATCACCTTCTTGGAGAATCATGAATGTCGTGAACCGTTGTGAGCAACAGGGAAAACCTCTCGTAATTGGTTGGGAATATAACACTCACCGTCAAGCATGGAACAACATGGAGAAAGCCTGA
- Protein Sequence
- MDIQDLKEIEVKKFVHIKQEPDNEVDVNNGEFIKFEVQDNINEMKCKFEELLHHSVNIKDENTSTVSSETTLKILTSEIARNDRPPFVCKRCNTTFTRKSNLKRHLLIHTGVKPYECSICKAKFSEKSKVKIHLTIHTGEKPFECGVCHSKFRQKSTLKKHLQIHTGDKPYLCHICDSRFAQTSNLQRHLKWHANEKPFACEICNYKCIEKKRLQIHLRSHTGEKPYACEMCDYKSAGRENLSRHVRIHTGEKPYVCEICSYKCSDKTRLSIHLRTHSGEKPFVCQVCGLRFSLNAILKCHARVHTGETPFSCQICGAKFTQKGSLRKHLRAHRSEKRFSCEICNTKFSQKVNLQVHLRIHTDASSAVPGESLEDSLLEGNTVGSRHKNTSPAMRRENAANRQNCRRQWRVQSPTKRQHIVETHLNQALDRTILATQERAMVVPIFAGFRCTEQILRVTCDGQTMKQVAAELELKGSLGGITDSSSNSIRRPYHQGSLMAALGTQQSGYGDGQKDVILPSIYHPIDSLELSPSWRIMNVVNRCEQQGKPLVIGWEYNTHRQAWNNMEKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00270249;
- 90% Identity
- iTF_00270249;
- 80% Identity
- iTF_00270249;