Clat022226.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720628.1:33738692-33739849[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.005 7.1 7.6 0.3 22 45 53 76 43 84 0.80 2 11 0.021 29 5.6 0.0 21 47 80 106 77 113 0.83 3 11 1.6 2.2e+03 -0.4 0.0 23 44 110 131 106 135 0.78 4 11 0.043 61 4.6 0.0 20 45 135 160 126 168 0.84 5 11 2 2.8e+03 -0.7 0.0 21 31 164 174 161 190 0.79 6 11 0.025 35 5.4 0.0 21 45 192 216 181 219 0.90 7 11 0.0022 3 8.8 0.1 20 48 219 247 216 251 0.77 8 11 0.0029 4 8.4 0.0 21 48 248 276 245 281 0.80 9 11 0.33 4.7e+02 1.8 0.1 21 49 277 305 273 309 0.73 10 11 0.00021 0.3 12.0 0.0 21 47 305 331 301 336 0.86 11 11 0.013 19 6.3 1.9 21 52 333 364 331 366 0.85
Sequence Information
- Coding Sequence
- ATGAATTCAGAGGAATTTCAAAACGAATTGGCTTTTGGTACCAAGGGAGTAGTAGTTAAAATAGAAGACATGAGTGGTATGGATATCAAGCTAGAAGAACTGCATCATTCCAttgaaattaaagaagaagCTTCAATTAACGAATCTCATAGTGAcaaaaaaccttttaattGTTACATTTGCCGGTATAAATGTGTACAAGAAAGAACTCTCAAAAAACATTTACTCACACATACAGGCGAGAAACCACATAAGTGTAacttttgtgattttaaagcTACaagaaaaggaaatttaaaacgtCATTTACGAACTCACACGGGATATAAACCACATAAgtgtaatatttgcgattatacAGCTTCGGAGAAGTcggatataaaaaaacatttatttaaacataccGGCGAAAAACCGTATGAGTGTCAAATCtgcgattttaaaacttctcaAAAAGGAAATCTAAAAGGCCATTACCTGATTCATACAGGAGAGAAACCATAtaaatgtaacatttgcgattttaaaactGCAACAAACGGAACCTTAAATGATCATTTACTATCTCATACTGGTGAGAAACCGtatgagtgtaacatttgcgattttaaaacttcCCAAAGAGGCAGTCTTAGAAATCACTTGGTGATTCATACAAGTGAAAAACCATATAAGTGCAACATTTGCGAATATAAGTTTAGTCTAAAAAGTCGTTTAAATCGTCATTTAGAAACTCATGCCGAGGAGAAGCCGTACGAGTGCAACATTTGcaatgattttaaaacttctcaAAAACGAAATCTAAAAGCTCACTTATTCATTCATTCAGGTGAGAAACCTTATGAGTGCAACATTTGCGAATATAAAAGTAATCGAAAAACAAGTTTAGAGTCTCATTTACGAATTCATAGAGGCGAGAAACCGTATGAGTGcaacatttgcgattttaagACTTCTCAAAAAAGAAATCTCAAAAACCACTTATTGATTCATACAGGTGAGAAACCATATAAGTGCAACATTTGCGAATATAAATGTAGGAGAAAAACTTGTTTAAATCGTCATTTACTAACCCATCCTGTTGAGAAACCGCACGTGGTATTTTTGGAAGCATCACTTGAAACGGATGCATGTGGTTTTACGAAACCACACTGCTAA
- Protein Sequence
- MNSEEFQNELAFGTKGVVVKIEDMSGMDIKLEELHHSIEIKEEASINESHSDKKPFNCYICRYKCVQERTLKKHLLTHTGEKPHKCNFCDFKATRKGNLKRHLRTHTGYKPHKCNICDYTASEKSDIKKHLFKHTGEKPYECQICDFKTSQKGNLKGHYLIHTGEKPYKCNICDFKTATNGTLNDHLLSHTGEKPYECNICDFKTSQRGSLRNHLVIHTSEKPYKCNICEYKFSLKSRLNRHLETHAEEKPYECNICNDFKTSQKRNLKAHLFIHSGEKPYECNICEYKSNRKTSLESHLRIHRGEKPYECNICDFKTSQKRNLKNHLLIHTGEKPYKCNICEYKCRRKTCLNRHLLTHPVEKPHVVFLEASLETDACGFTKPHC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00270254;
- 90% Identity
- iTF_00270254;
- 80% Identity
- iTF_00270254;