Clat019093.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720628.1:8483254-8484546[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.023 32 5.5 0.0 21 46 120 145 110 152 0.85 2 9 0.047 66 4.5 0.0 21 46 148 173 144 180 0.85 3 9 0.0053 7.5 7.5 0.0 23 45 178 200 172 203 0.88 4 9 0.00031 0.44 11.5 0.3 21 45 204 228 200 236 0.86 5 9 0.08 1.1e+02 3.8 0.3 21 44 260 283 252 291 0.85 6 9 0.2 2.8e+02 2.5 0.0 21 45 288 312 285 319 0.89 7 9 0.067 95 4.0 0.3 21 45 344 368 336 372 0.84 8 9 0.0048 6.7 7.7 0.0 21 51 372 402 368 403 0.87 9 9 6.2e-06 0.0088 16.9 0.6 22 45 401 424 398 430 0.86
Sequence Information
- Coding Sequence
- atgattaaagtGGAACCTTGGGatgaatttgaagaaaataaacaattgttatGCATTTCCCAAGACGGAAATGACCCCAACTGTAGTATTAACATTAAGACGGAAGCAAATGAAGGTAACGACAGTGGATATTATTCTATTACgattaaagaagaaattgcACCCCTGGAAGAACAATTTTACAATGAATtggaaactgaaataaaaccGAACATTTTTGCGTGCGCATTAACTGTACCGAATAACTTACAGACGGAAACCATTCATGCGACCgaaagattattatttgtatgtgAGTTTTGTAACTGCAGGTTTTCCATTAAATCCCAGTTAGAAAGGCATCTGAGAACCCATACCGGCGAAAAACCTTTCACATGCGAATTTTgtacatcaaaattttcagaacgGAGAATTTTGCAGGAGCATCTGAGGACCCATACTGGTGAAAAGCCGTTTTTATGCAAAGTTTGCGACTTGAAATTTTCGCAAAAAGGCAACTTACATGCACATCTAAGAACTCATTCTGGATTGAAACCGTTCGACTGCGATACTTGTGATGCCAAATTTTCGCAAAAAGGAAATTTGCAAAGGCACTTGAGAACACATACAGGTGAGAAACCGTattcttgtaaaatttgtcACCAGACGTTTCGAGAAAACAGAAGTTTACAAGGCCACCTACGAAGTCACACCGGTGAAAAACCCTTTGAGTGCGTactttgtgattttaaatgttccTACAAATTAAGCCTGCAAACTCATTTGAGGACGCATACAGGCGAAAAACCACACGCTTGTTCGCTGTGCGATTTCAAGTGTTCACACAAGGTGAGCCTGCGAAGACACATACTAACCCACACGGGTGAAAAACCATTTATGTGCGAAGTATGCAAActgaaattttctcaaaaaggACACATGCAGCGTCATATGAGAACCCACACCGGCGAAAAACTGATCGAGTGCAAATTTTGTAACGCAAAAGTTTTGGACAAAAGAATTATGGAAGAACACATACGAACTCATACGGGGGAAAAACCTTTCTCGTGCGACTTTTGCAACTTCAAGTGTTCGCACAGGCAAAGTATGCGAAGACATCTGAGGACTCATACGGGTGAAAAACCGTTTGCGTGCCGggtttgcaatttcaaattttcacaaaaagaTACTTTGCGTGAACATTTGAATATTCATACGGGCGATAAGCCGTACACATGCGGAATTTGTGGCTTTAAGTGCTCACAGAAAAGAAATCTACGAAGACATGTTAGGCATCACATGGTGAAAAAGTAA
- Protein Sequence
- MIKVEPWDEFEENKQLLCISQDGNDPNCSINIKTEANEGNDSGYYSITIKEEIAPLEEQFYNELETEIKPNIFACALTVPNNLQTETIHATERLLFVCEFCNCRFSIKSQLERHLRTHTGEKPFTCEFCTSKFSERRILQEHLRTHTGEKPFLCKVCDLKFSQKGNLHAHLRTHSGLKPFDCDTCDAKFSQKGNLQRHLRTHTGEKPYSCKICHQTFRENRSLQGHLRSHTGEKPFECVLCDFKCSYKLSLQTHLRTHTGEKPHACSLCDFKCSHKVSLRRHILTHTGEKPFMCEVCKLKFSQKGHMQRHMRTHTGEKLIECKFCNAKVLDKRIMEEHIRTHTGEKPFSCDFCNFKCSHRQSMRRHLRTHTGEKPFACRVCNFKFSQKDTLREHLNIHTGDKPYTCGICGFKCSQKRNLRRHVRHHMVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271686;
- 90% Identity
- iTF_01292454;
- 80% Identity
- iTF_00270268;