Clat009719.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720625.1:2300456-2304956[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 9.5e-05 0.0049 18.0 0.1 3 23 687 707 686 707 0.98 2 10 1.8 92 4.6 0.6 1 23 709 731 709 731 0.97 3 10 0.057 2.9 9.3 1.2 1 23 752 774 752 774 0.98 4 10 0.0018 0.093 14.0 5.0 1 23 780 802 780 802 0.99 5 10 2.4 1.3e+02 4.1 2.7 1 23 810 833 810 833 0.96 6 10 3.4e-05 0.0018 19.4 1.9 1 23 942 964 942 964 0.98 7 10 0.00011 0.0057 17.8 1.7 2 23 972 993 971 993 0.97 8 10 0.0071 0.37 12.1 4.0 1 23 999 1021 999 1021 0.98 9 10 0.00039 0.02 16.1 1.8 1 23 1027 1049 1027 1049 0.98 10 10 0.18 9.6 7.7 0.2 1 23 1055 1077 1055 1077 0.97
Sequence Information
- Coding Sequence
- ATGGGCTGGGCTTCTTTCAGTCCAGACAAAtgGCTTCCATTTGGTCAGACAGAACCAAATTTATCATTCAATTCATCCACACATTCGTTATCGAAAAGCTTCCAGTCGACACCATCTGCACTTTATCCAACTAATTTTGATGTTACATCGCAGCATTCACCTGCTCCGGCTCCAACGTCTCCATTCTTTCATCAAGCGCAAAATTATCCAACAAACATTAACAGTACATTTCGTGTGCCACCACAAGCTGTCTTCCAGACATCTCAGCCTTTTTCTTCTCATTATTCTGCGCAAAATGTACCTTCGCAACGGTCAAATGGTTCATCTCCATCCATACTTCATTCTACCTTGCTTAACAGGCCCCGACATCAATCCTTGGATCCTTACAATCCCACATATCATCCgcgtttttccaaaaataatcaattccCATCCTCAAATCAATCCAACTATCCTTTAACAGTATTACAGCAGTTACCGCGCGTCCCCTCGTCGTTTAATTCTGATTCTGCAAACCAATTCTCATTTTATCCATATCCACCTTCGCTTAACAGACCTCTGAAACCCCCGTCAGCCGTACGACAAAGATCGCCTATACAACAAAGATCTCCTTTTCCTATATTTAATTCCCCTCCATTggcagaaaatcaaaatacagcAGCTTTACATCAAAATAATCCGCCATCTTTGCCTATACTTAATCCCCCGTCTTTAGCTGAATTTCAATCCGCTCTACAACCTTCACAAGAACCTGACTCCCAGCAGAAAGCATCGACAACGCATCCTGCCACACCCATACCCAATCAATCGCCACTAACCGAATTTAGTTCTCCACCTCCAGACATTAAACCGATACTTCCGTCATCTTCgcctaaaaataattcaacttcACCCAAAATTAATGTATCTCCAATTCTTCAGTCACCACCTCCACTTGAATCCACTCTAATTGAACAGCCTTCAGTTCAACAAAGTTTGATTCAACAACCTATAGTTCTGCAGCCGTCAAATCAACAACTCCCAGTTCATCTTCCTTCATTTCAGCAAGATGGCGGTCAACATCTTCAAATCCAACCACCTTCTCAGCAAGTGCAACCTTCAAATATACCATCTTCACTTGCATCGCTTTTACTTCAACCATCCTTGGATCACTTATCTTCAAATCAACAGTCAAGTAACAACCAAGCTTTAGTTTTCTCATCTTCAAATCAACCACCTCCACTTTATCCAACTTCCAATCAATCGCCCTCGATGCAACCACCTCAGGCATCTTCAATGCACCCCCTCCAATTATCTTCATTGCATCCAAATCGCAATTCTTTTACTCCGCCTTCGCCATTTAATCGACCTAATTTTAATTCCGTCTCGCCAATGCAACCGAACCTAGCAAGATTTAACCATCCTTCGGGTAAATTTAACTCCCTGTCATCAACAAGATTTACACCCCCACCGTCTCATCATTCGTCTTCGGGAAAATTCGATTCCACCCCACCTCTCCACCAATCGTCGTTTAATTTCCCGCCATCGGCCCATCATAATCAATCATCCGAATTTAACTCAAACTCTTCCATGTACTCGCCGCCATTTTACCCAATGTCCTACAACAACGGATCGGGGCTCCGTCCCTCAATATCTTCCGGAGACTCATCGCCAATGTTCCATTCGAATCTATCTTTTCATCCAAACTTTGCGAACCGACCACATTTTTCTTCCATGCGCCCACCCATGTCATCAATTCGTCCACACTTGTCATCAATCCGGCCCCACTTATCGTCGATTCGCTCGTCTGTGCCATCTCCACCTCCTCCAAATCTACCCCCTCTCTTCTTCCCGCCCTCATCAACCGTATCTTCGTTCCTCCAAGCCATGCGGCCGCCGCCTTCGCAAAATTCGACGTTCCTACAGCATCCCTCAATGTATCGCTTACCTCAACCTGGACCAAACGCGCAACTCCGCCTATTTAATCCAAACTTTTCCTCTCTCAACATGAACGGAATGCAAGATCCGGCAAATCAAGCAAACTTTTCACATCAAATGAACAAACCTCCAGTTTTGCTGTGTCCAATATGCGGAAGAAATTTTGTATCCAAAGAGCTTCTTGACCAACACATGACCATCCATACTTTTAAGTGCGACCCATGCAATTTCTTAACGACCTCAAACGAAAGTTACATTGAACATTTGTCGACCCACAAAACATGTGATACTACAGATGCAAGTAACGACAAACCACAAGAACCTATTGATCAGGTGTACAAATGCACTACTTGCAACTACAACACTCAGGATAAAGCTTCCTATGAAGAACACACCATTTCTCATAAATCAGAATATTTTTACAAGTGCCAATTGTGTACCTTCAAAACTATACACTCATACAGCTTGAGGAGACACATGAAGGTGCACTCAACCGTTACAGATTCCATTTACAAATGTAACCAGTGCGCTTTCGATTGCGATAAGGATAATCTTTTGAAAGATCACATGATTAAGTTTCACTCCGAAAAGGTTTCGAATGCTGAGGCTGAAGAAGAACTCGTGCAAGTGGAGCCGTATCAGGTTTCCATCGACgatatccaaaatatttttcaagacGACCACGAGTCGAACGACGAAGGCGAGAAGGAGGAGCTTCTTATGGAAAACGAAAATGAACTTATGGACGATTCGGATTCGTACATGATTACAGCTGCAGATTTAGAGAAGATTTTGAAGGAAGAACCGTCGGACGATCTCGAAAATGACGCGGCCGATTCGAAAAGTAAGAACAACGATTTTGAGTTGGGCCGCGAAGACGGCGGCGACTGCAGCGATAAAAGTGTGTTTAAGTGCTCGGTATGTAATCAACCGTTTCAGTTTAAATATCAACTGAAGAAGCACATGATAATTCATTCGGTCACGAAGAAAATATTGGAATGTAAAATGTGCGAATATCGGACAACCACGAAAAGTCATCTACAAGTTCATATAGCCACCCATACGGGCGGGAAAATTTACAGGTGCGACCAGTGTAGTTATTGTACGGTGTATTTTAGTAATCTAGAAAAGCACAACAGGGTgcatactggcgagaaaccataCAAATGTGATTATTGTGATTATAGCGTAACAAAATTGTCACGATTGAAAAATCACTTGAACAATCAcgccaaacaaaaattatacacgTGTAAAGAATGTTTTTATGAAGCGGATAGCGAAGAAAATTTACTGAGCCATAAAGAAATACACTCGATGGGCAAGCACTTTCTGGAAGATCCCGTTAGTGCCACAAGCAGTAACTTATCTTAA
- Protein Sequence
- MGWASFSPDKWLPFGQTEPNLSFNSSTHSLSKSFQSTPSALYPTNFDVTSQHSPAPAPTSPFFHQAQNYPTNINSTFRVPPQAVFQTSQPFSSHYSAQNVPSQRSNGSSPSILHSTLLNRPRHQSLDPYNPTYHPRFSKNNQFPSSNQSNYPLTVLQQLPRVPSSFNSDSANQFSFYPYPPSLNRPLKPPSAVRQRSPIQQRSPFPIFNSPPLAENQNTAALHQNNPPSLPILNPPSLAEFQSALQPSQEPDSQQKASTTHPATPIPNQSPLTEFSSPPPDIKPILPSSSPKNNSTSPKINVSPILQSPPPLESTLIEQPSVQQSLIQQPIVLQPSNQQLPVHLPSFQQDGGQHLQIQPPSQQVQPSNIPSSLASLLLQPSLDHLSSNQQSSNNQALVFSSSNQPPPLYPTSNQSPSMQPPQASSMHPLQLSSLHPNRNSFTPPSPFNRPNFNSVSPMQPNLARFNHPSGKFNSLSSTRFTPPPSHHSSSGKFDSTPPLHQSSFNFPPSAHHNQSSEFNSNSSMYSPPFYPMSYNNGSGLRPSISSGDSSPMFHSNLSFHPNFANRPHFSSMRPPMSSIRPHLSSIRPHLSSIRSSVPSPPPPNLPPLFFPPSSTVSSFLQAMRPPPSQNSTFLQHPSMYRLPQPGPNAQLRLFNPNFSSLNMNGMQDPANQANFSHQMNKPPVLLCPICGRNFVSKELLDQHMTIHTFKCDPCNFLTTSNESYIEHLSTHKTCDTTDASNDKPQEPIDQVYKCTTCNYNTQDKASYEEHTISHKSEYFYKCQLCTFKTIHSYSLRRHMKVHSTVTDSIYKCNQCAFDCDKDNLLKDHMIKFHSEKVSNAEAEEELVQVEPYQVSIDDIQNIFQDDHESNDEGEKEELLMENENELMDDSDSYMITAADLEKILKEEPSDDLENDAADSKSKNNDFELGREDGGDCSDKSVFKCSVCNQPFQFKYQLKKHMIIHSVTKKILECKMCEYRTTTKSHLQVHIATHTGGKIYRCDQCSYCTVYFSNLEKHNRVHTGEKPYKCDYCDYSVTKLSRLKNHLNNHAKQKLYTCKECFYEADSEENLLSHKEIHSMGKHFLEDPVSATSSNLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00273136;
- 90% Identity
- iTF_00269172;
- 80% Identity
- -