Clat015939.1
Basic Information
- Insect
- Cantharis lateralis
- Gene Symbol
- -
- Assembly
- GCA_963170105.1
- Location
- OY720627.1:1386304-1388053[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.082 4.3 8.8 0.3 1 23 134 156 134 156 0.99 2 13 0.0025 0.13 13.5 0.5 3 23 164 183 163 183 0.96 3 13 0.00031 0.016 16.4 2.6 3 23 190 210 188 210 0.97 4 13 6.7e-05 0.0035 18.5 3.0 1 23 215 237 215 237 0.98 5 13 0.00063 0.033 15.4 0.1 2 21 246 265 245 266 0.94 6 13 0.00019 0.0099 17.0 1.1 1 23 273 295 273 295 0.97 7 13 9.6e-06 0.0005 21.1 0.8 1 23 301 324 301 324 0.95 8 13 0.068 3.5 9.0 0.1 3 23 353 372 352 372 0.95 9 13 5.2e-05 0.0027 18.8 3.8 2 23 378 399 377 399 0.97 10 13 0.00015 0.0078 17.4 3.2 1 23 404 426 404 426 0.96 11 13 8.8e-05 0.0046 18.1 0.9 2 23 435 456 434 456 0.96 12 13 0.0061 0.32 12.3 4.5 1 23 462 484 462 484 0.98 13 13 0.001 0.054 14.7 0.5 1 23 490 513 490 513 0.97
Sequence Information
- Coding Sequence
- ATGGAATTTGAGTGCCGAACatgcttaaaattttccgTCAACAtgagaaatatattttcagatGATTTACCCCACAAAATAGAAACAATAGCTTCGGTAGAGGTTCTGGAAAGCGACAGGTTTTCATCTAAAATATGCGAAGAGTGCGTAACAAACGTGAAACTGATGTACGAATTTCGTAAAGTTGTCAGATCGAGTAACATGATTTTAATGAAACGTTCCATGAAAGAAGAGGTGGCGGTTGCCTTGCAAAATGAGGAGTTTTCCACAAACGAAACTGTCGAAACGGAACTTGTGTTAAAAGAAGAAGACATTTCAGATTATTGCGAAATGGACAACGAGAACGATAATGACGACGAAATCGAGGCACCTGAGACTGGAAGTgagaaaatagaaatatacAAGTGCGTTCGTTGTGATTTTACAAGTCCCGAGTACGATTTATGGGAGGCTCATCAAAAGAGACACAAAAAAACCAAGCTagctaattgtaaaatttgcggTAAATCAGTTATAAGTTATAATCTTAAAAGGCACTACCTGATCCATACAGAATCTCCGGTGAATTGTGAAGTTTGCGGCCAGGTGTGTAAGCACGAGGAATCGTTACGGTCGCACATGTTCACGCACAGGAACGGTCCATACCCTTGTACGATATGTGGGAAAATTTATCGACACAGACAAAGTTACAACGCTCACAAAAAACGGCACACACCTCGAGATGACAATATGGTGGAATGTGCAACatgtggaaaattattttcggatAAAAAAATGCTGATTCAACATATAAACAGTTGTACTTGTGAAAAACCATTTCCTTGTAAGTTTTGCGACAAAGGTTTTACGAGCAATTCTGCCCGAAACACACACGAGAGGCTTCATACCAACGAAAAGCCATTTTTGTGTGATTACTGTGACGAGGCTTTCTCTCAGAAGGTTTCTTTGCAAACGCACCTAAAATCTAAACATCCTGACAAAGTAATTGTTAACATAGAAATCGCAGGTTTTCCAAAGTGTGATCAAAAGAAAcctaaaaattacaagcaagcCATTTGCAGCATTTGCGGAAAGTCAGTTATAAGTTACAACATCAAAAGACACTACCTGATCCACACAGAATCTCCGGTCAAATGCAAAACTTGCGGAAAAGTTTGTAAGCACGAGGAATCATTACGAGCGCATATGTATATGCATAATAAAGGTCCATACCTGTGCACGATATGCGGGAAGGTTTATCGTCACCGACAAGATTACAACGTTCACAAAAAACGACACGCATctgGGGATGCTAAGACCATAGAATGTTTAACATGCGGAAaacgattttttaataagacaACGCTGGTGAGACATATTTATAGTCACACCGGTGAAAGACCCTATccatgtaaattttgcaacaaagGATTCACCAGCACTCACGCTCGAAAGACACACGAAAGGCGTCACACAAACGAAAAACCTTTTTCGTGTGATTTTTGCGATGCGACGTTTCCTCAGGGGGTTTCCTTACGAACGCATCTCAAATCTAAACATCCTGACcaaataattgtttacaaagaaattgctgagtaa
- Protein Sequence
- MEFECRTCLKFSVNMRNIFSDDLPHKIETIASVEVLESDRFSSKICEECVTNVKLMYEFRKVVRSSNMILMKRSMKEEVAVALQNEEFSTNETVETELVLKEEDISDYCEMDNENDNDDEIEAPETGSEKIEIYKCVRCDFTSPEYDLWEAHQKRHKKTKLANCKICGKSVISYNLKRHYLIHTESPVNCEVCGQVCKHEESLRSHMFTHRNGPYPCTICGKIYRHRQSYNAHKKRHTPRDDNMVECATCGKLFSDKKMLIQHINSCTCEKPFPCKFCDKGFTSNSARNTHERLHTNEKPFLCDYCDEAFSQKVSLQTHLKSKHPDKVIVNIEIAGFPKCDQKKPKNYKQAICSICGKSVISYNIKRHYLIHTESPVKCKTCGKVCKHEESLRAHMYMHNKGPYLCTICGKVYRHRQDYNVHKKRHASGDAKTIECLTCGKRFFNKTTLVRHIYSHTGERPYPCKFCNKGFTSTHARKTHERRHTNEKPFSCDFCDATFPQGVSLRTHLKSKHPDQIIVYKEIAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00268928;
- 90% Identity
- -
- 80% Identity
- -