Cfla020913.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424437.1:34422309-34423732[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.15 5.8e+02 1.8 0.1 23 52 146 175 132 181 0.79 2 10 0.63 2.5e+03 -0.2 0.0 21 45 200 224 196 231 0.76 3 10 0.022 87 4.5 0.1 21 45 228 252 220 262 0.87 4 10 0.49 1.9e+03 0.2 0.2 23 46 258 281 254 291 0.63 5 10 0.41 1.6e+03 0.4 0.1 21 47 284 310 277 316 0.75 6 10 0.0019 7.4 7.9 0.2 21 46 312 337 308 343 0.90 7 10 0.0071 28 6.0 0.2 22 46 341 365 338 369 0.88 8 10 1 4e+03 -0.9 0.0 27 49 373 395 370 398 0.83 9 10 8.2e-05 0.32 12.2 0.0 21 50 395 424 391 426 0.87 10 10 0.014 56 5.1 0.1 22 46 424 448 419 450 0.90
Sequence Information
- Coding Sequence
- ATGTTCGGAGGTGAAAGCCCAGAAATAAAACTTAACGAAAACCATAACAACGAGAAAGCCACTCGTGAAATTGAGCAAACACCGCCATCATCTGAAGAAGAAACGCCTGGAAAAGACAGGGACAGCTTTACAACACAactaaaaattaactttcaatcTTCGGAAGAAATGGAATACAAGTTGGAGCCCCACCAGTTTATCAACATTAAAGAAGAACCATCTCTGTCTCTAACTATAAAACAAGAAGTTCAAAGTGAAAGTTTAAATTCCCTTGATGTTCAGGAACAATTCCTCATCAAGCCCGAAGTTAAACTGGAGATAGGAGATCATGCCGTTAATATTAACCAAGACAATAATTCATTGATTCGAAAACACAATCGATTAGTGTTTACAATCTGCAAATccaaatcaaaagaaaaatcaGCTTTGAAACTTCAGACATTCATGTGTGAAGTTTGTGGCCTGAAACTTAGAAGCAAATCAAGTTTAAAAAGCCACTTAAgaattcataccggcgaaaaaccattttcttgtaaattttgtgaCAATAAATTCTCGGATAAAGGAAAACTGAATTTGCACTTCAgaattcataccggcgaaaaaccatttatttGCAAAGTGTGTGATTTCAAGTTTTCGCGTAAAGGAAGTTTGACGAAGCATTTGAGAACTCATACGGGAGAAAAACCATACGCATGTCATATTTGTGGTCATAAGTTCGCATTAAACGTAAATTTGAAACAGCACTTAATAATTCACACGGGCGAGAAACGGTTTGCTTGCgaaatttgcgattataaaagttcGAGAAGAGAAACTCTGAGCAGACATTTGAAAAatcatacgggggaaaaaccaTTTGCCTGTAAATTGTGCGAGTACAAATGTCTAACTGCCAAAAGATTAAACGTTCATTTAAGAATCCACACTGGAGAAAAACCATTCGCCTGTGAGATTTGCGCATGTAAATTTTCGGAAATAGGAACTTTGCGTAGACACCTGCGAATCCACGCAGGCGAAAAATCATTTGAATGCGAAATTTGTTGCTCGAAGTTTAGGCACCAATCGTCGTTGAAGAAGCACCTAAAACTCCACATGGGCGAAACATTTGAGTGTTCAATTTGTGATAAAAAGTTTTCGCAAAAATCGTGTTTGAATGTACATTTAAAAATCCACAGCGGTGAAAAGCCGTTTGAGTGCGGGATTTGTAGTTCCAGCTTCTCACAAAAAGGAAACTTGCGGGATCACTTAAGAATTCACACGGGAGATAAACCGTTTGCCTGCGAAATATGTAGTACAAAATTTTCAcacaaatcaaatttaaatcagcatttgaaaattcataataaGTAG
- Protein Sequence
- MFGGESPEIKLNENHNNEKATREIEQTPPSSEEETPGKDRDSFTTQLKINFQSSEEMEYKLEPHQFINIKEEPSLSLTIKQEVQSESLNSLDVQEQFLIKPEVKLEIGDHAVNINQDNNSLIRKHNRLVFTICKSKSKEKSALKLQTFMCEVCGLKLRSKSSLKSHLRIHTGEKPFSCKFCDNKFSDKGKLNLHFRIHTGEKPFICKVCDFKFSRKGSLTKHLRTHTGEKPYACHICGHKFALNVNLKQHLIIHTGEKRFACEICDYKSSRRETLSRHLKNHTGEKPFACKLCEYKCLTAKRLNVHLRIHTGEKPFACEICACKFSEIGTLRRHLRIHAGEKSFECEICCSKFRHQSSLKKHLKLHMGETFECSICDKKFSQKSCLNVHLKIHSGEKPFECGICSSSFSQKGNLRDHLRIHTGDKPFACEICSTKFSHKSNLNQHLKIHNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271606;
- 90% Identity
- iTF_00271606;
- 80% Identity
- iTF_00268886;