Cfla015947.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424437.1:6587355-6588086[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.7e-05 0.38 12.0 0.3 21 49 55 83 49 87 0.85 2 4 9.1e-05 0.36 12.1 0.4 20 47 111 138 104 143 0.82 3 4 0.0011 4.4 8.6 0.2 21 49 140 168 136 172 0.80 4 4 0.043 1.7e+02 3.5 0.2 20 40 196 216 189 219 0.78
Sequence Information
- Coding Sequence
- ATGGACAAGGTGGGATATTCGGAAGAGTTACAAAATCTAAAGAGAGAAATTAAATCGGAAGATAGAGAATTAGAAGAATTACATCATTCAATTGACATTAAGGAAGAGGATGTTCCTGAAGAACAAGCAACAATTCAAACcgtcCATATACGAACTTATACGAGCCAGAAACCGTACGGGTGTAgcatttgcaaatataaatcTTCACAAAGCGGACACTTAAAACGTCATTTACAAACTCATGCACGTTTGAAACCGTCGTATGAGTGTTACAATTGCGGTTACAAATGTTCACAAAAAGGAAAGTTGATACAACATATGCGATCTCATACGAACGAGAAACCTTACGAATGtaacatttgtgattataaatgttcacaaaaaagaAGTTTAAGATTTCATTTACAGGcccatacgggcgagaaaccgtatgaatGTGAAATATGCGATTATAAAACTATCCGACCAGCAGATTTAAAACGTCATTTACAAACTCATGCACGTTTGAAACCGTCGTATGAGTGTTACAATTGCGGTTACAAATGTTCACAAAAAGGAAAGTTGATACAACATATGCGATCTCATACGAACGAGAAACCTTACGAATGtaacatttgtgattataaatgttcacaaaaaagaagtttatcaatcaaatcaatcaaataa
- Protein Sequence
- MDKVGYSEELQNLKREIKSEDRELEELHHSIDIKEEDVPEEQATIQTVHIRTYTSQKPYGCSICKYKSSQSGHLKRHLQTHARLKPSYECYNCGYKCSQKGKLIQHMRSHTNEKPYECNICDYKCSQKRSLRFHLQAHTGEKPYECEICDYKTIRPADLKRHLQTHARLKPSYECYNCGYKCSQKGKLIQHMRSHTNEKPYECNICDYKCSQKRSLSIKSIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00269156;
- 90% Identity
- iTF_00269156;
- 80% Identity
- iTF_00269189;