Basic Information

Insect: Cantharis flavilabris
Gene Symbol: -
Assembly: GCA_949152465.1
Location: OX424437.1:5055546-5057171[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.016 64 4.9 0.1 21 49 74 102 67 105 0.83

2 15 2.3e-05 0.091 14.0 0.0 21 52 102 133 99 134 0.88

3 15 0.074 2.9e+02 2.8 0.2 22 48 131 157 128 161 0.85

4 15 0.059 2.4e+02 3.1 0.2 21 45 158 182 154 189 0.84

5 15 0.19 7.6e+02 1.4 0.1 22 51 187 215 178 216 0.81

6 15 0.00014 0.54 11.5 0.1 21 48 242 269 238 274 0.85

7 15 0.52 2.1e+03 0.1 0.1 21 45 270 294 268 300 0.85

8 15 2.2 8.6e+03 -1.9 0.0 25 44 294 313 283 316 0.80

9 15 0.86 3.4e+03 -0.6 0.1 27 46 324 343 321 349 0.83

10 15 0.00029 1.2 10.5 0.2 21 45 346 370 338 377 0.83

11 15 0.042 1.7e+02 3.5 0.0 21 51 374 404 371 406 0.86

12 15 0.16 6.2e+02 1.7 0.0 21 45 402 426 398 435 0.84

13 15 0.68 2.7e+03 -0.3 0.0 21 45 430 454 427 460 0.87

14 15 1.2 4.8e+03 -1.1 0.2 26 47 463 484 457 490 0.79

15 15 0.19 7.5e+02 1.5 0.0 21 45 514 538 506 540 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.016	64	4.9	0.1	21	49	74	102	67	105	0.83
2	15	2.3e-05	0.091	14.0	0.0	21	52	102	133	99	134	0.88
3	15	0.074	2.9e+02	2.8	0.2	22	48	131	157	128	161	0.85
4	15	0.059	2.4e+02	3.1	0.2	21	45	158	182	154	189	0.84
5	15	0.19	7.6e+02	1.4	0.1	22	51	187	215	178	216	0.81
6	15	0.00014	0.54	11.5	0.1	21	48	242	269	238	274	0.85
7	15	0.52	2.1e+03	0.1	0.1	21	45	270	294	268	300	0.85
8	15	2.2	8.6e+03	-1.9	0.0	25	44	294	313	283	316	0.80
9	15	0.86	3.4e+03	-0.6	0.1	27	46	324	343	321	349	0.83
10	15	0.00029	1.2	10.5	0.2	21	45	346	370	338	377	0.83
11	15	0.042	1.7e+02	3.5	0.0	21	51	374	404	371	406	0.86
12	15	0.16	6.2e+02	1.7	0.0	21	45	402	426	398	435	0.84
13	15	0.68	2.7e+03	-0.3	0.0	21	45	430	454	427	460	0.87
14	15	1.2	4.8e+03	-1.1	0.2	26	47	463	484	457	490	0.79
15	15	0.19	7.5e+02	1.5	0.0	21	45	514	538	506	540	0.87

Sequence Information

Coding Sequence: ATGTTGGCATACGAAGATACCATGCATGTCGACTCGAAACCTTCACATCATTCCGAAGACACTTTCATTAAACGAGAAACAGAAAATGAGagcaaacatattaaaattgaagaaatggAGGATGTGGATATGAAGCTGGAATctttgcatcattccattgataTCAAAGAGGAGATTTCTGCGAAGGACTCTCAATTGGATCAAGATCAAAGCCCTTCCGCTAGACAACCGTTGGAgtgtaaattttgcaataatacaTTTTTGACTAAGGAAAAATTGAAACGGCATTTACGAAtccataccggggaaaaaccgtttgtgTGTAcaatttgcgattttaaattttctcaaaaacaaaatttgaaacgaCATTTACATAttcacaccggggaaaaaccgttcgagtgtacAGCTTGTGAATATAAATGTACTCAACGAACATCGTTGAGAGACCATTTACGAgttcataccggggaaaaaccatttaagtgtACAATTTGCGATTATGAATGTTCACAAAAATCTGTTTTGAGATACCATGTACAAAGTCATACCGATGATAAACCGTTTGACTGTACTGTTTGCGGTTATAAATGTAATCAAAAGGGAAAATTGAAAGTGCATTTACGAACTCACTTCCGCAAGAAGCTGTTACAATGTGCAGTTTGCGAATTTAAATGTAGCGAAAAAACTGGGCTGAGAAACCATTTACTAACCCACAGCGGGGAAAAACCATTCGAATGTAGCatttgcgattacaaatgttCTCAAAAATCAAATCTGAAGCGCCATTTACTAATtcacaccggcgagaaaccatttaagtgtGCAATGTGCGATTATCAATGTTCACAAAAATCTAGTCTGAGTTACCATTTACAAACCCATACTgtttgcaattataaaattaatcaaaaaggAAAATTGAAAGGACATTTACGAACGTACACTCGCAAGGAGCTGTTAATCTGcgcaatttgcaattttaattgtaGCCAAAAAACTGTGCTGAAAAACCATTTACGAACTCACAGCGGTGAAAAACCCTTCGAATGTACAATTTGCGATTTTAGATGTTCCCAAAAGCCAAATCTGAAACGGCATTTACTaactcacaccggcgagaaaccattcgAATGTACAATTTGTGATTTCAAATGTTCTCAGCAGACTATCCTGAAAGACCACTTACGTATTCACACCGGTGAGAAACCATTCAAGTGTACAATGTGCGATTATAAGGGATCGCAAAAATCTGCTTTGAGGTATCATTTACTAACCCATTctggtgaaaaaccatttaagtgtACTGCATGCGAGTTGAAATTTTACCAAAGAGGAAAATTGAATAagcatttacgaactcataccggcgacaAGCTGTTAATATGTCCGCAATGCGATTTTAAATGTAGCCAAAAAATTAAGTATAGACACCATTTGCGAACCCATAACGGCGAGAAACCATTCGAGTGTACTAGTTGCGATTATACTTCTTTTCGAACATACGAATGGAAAAACCATTTACGGACCCATACCGgtgaaaaaccgttcgagtgttCGGTTTGCGATTTTAAAACTACTCAGAAAAGTTATTTGACAAAGCATTTGAAAACTCATATGTAG
Protein Sequence: MLAYEDTMHVDSKPSHHSEDTFIKRETENESKHIKIEEMEDVDMKLESLHHSIDIKEEISAKDSQLDQDQSPSARQPLECKFCNNTFLTKEKLKRHLRIHTGEKPFVCTICDFKFSQKQNLKRHLHIHTGEKPFECTACEYKCTQRTSLRDHLRVHTGEKPFKCTICDYECSQKSVLRYHVQSHTDDKPFDCTVCGYKCNQKGKLKVHLRTHFRKKLLQCAVCEFKCSEKTGLRNHLLTHSGEKPFECSICDYKCSQKSNLKRHLLIHTGEKPFKCAMCDYQCSQKSSLSYHLQTHTVCNYKINQKGKLKGHLRTYTRKELLICAICNFNCSQKTVLKNHLRTHSGEKPFECTICDFRCSQKPNLKRHLLTHTGEKPFECTICDFKCSQQTILKDHLRIHTGEKPFKCTMCDYKGSQKSALRYHLLTHSGEKPFKCTACELKFYQRGKLNKHLRTHTGDKLLICPQCDFKCSQKIKYRHHLRTHNGEKPFECTSCDYTSFRTYEWKNHLRTHTGEKPFECSVCDFKTTQKSYLTKHLKTHM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00268837;
90% Identity: iTF_00268837;
80% Identity: iTF_00268837;