Cfla020873.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424437.1:34263404-34264636[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0022 8.9 7.6 0.0 18 45 93 120 87 128 0.82 2 10 0.31 1.2e+03 0.8 0.0 23 46 126 149 121 155 0.87 3 10 0.62 2.5e+03 -0.2 0.0 25 44 156 175 151 179 0.83 4 10 0.17 6.9e+02 1.6 0.0 21 49 180 208 175 211 0.83 5 10 0.05 2e+02 3.3 0.0 21 45 208 232 205 239 0.86 6 10 0.047 1.9e+02 3.4 0.0 21 48 236 263 231 269 0.81 7 10 0.063 2.5e+02 3.0 0.2 21 44 264 287 260 291 0.91 8 10 0.041 1.6e+02 3.6 0.1 21 43 292 314 289 322 0.84 9 10 0.097 3.9e+02 2.4 0.0 23 44 345 366 341 370 0.88 10 10 7.9e-05 0.31 12.3 0.1 21 44 371 394 367 398 0.92
Sequence Information
- Coding Sequence
- ATGTCAAACTCTCGAAAGAAGGAACAGGAAATAGTTATCGTGATTAAAGAGGAATCTCAGGATGAAATTGAGGACGAACAATTTCCAAGCTGCATCCAGTTTGTTAGCGATGATATCCACAACAACtgtgaaattaaaatgaaaatgaaaagttCCGAATGTGAATTATCCGaagaagtttttataaaatttgaaacaggAAATGACTCAAACGGCCGATCTCTTTCCATTAAACCTTGTGACAATCAGTTGTCGCTCTCCGAAAGTACACAAACCTTTTCTACGGAAGAAAAACTGTTTACttgtgaaatttgcaacaaaacgTATACCAAAAAAGTGAACCTACAGCGTCATTTTCGTAATCACATGGGAGTAAAACCGTATCCTTGTGAAACTTgtggtaaaaaattttcacaaaaagcAGACATGcaaagacatttaaaaattcataccggagaaaaattattttcttgtgaaatttgtgacaAAAAATACACGGAAAAAGCAAATTTGGTCCGTCACTTTAGAAATCACACCGGTGAAAATCCATTTGCTTGTGATACTTGCGGCaggaaattttcaagaaaaacaagTTTGCAGCGACATATCAAAATTCAcactggcgaaaagccattttcTTGCGAGGTTTGCGAAAAGAAGTTTTTGCAGAAAGCAGATATGTTGCGTCATTTAAGGTCTCACACGGGGGAAAAACCATTCGGATGTGAAGTTTGTGGACTAAGGTACACGGAAAAAATAAACCTGGAACGTCATTTTAGATTTCATACCGGAGAAAAACCATTCGCTTgcaatttttgtcaaaaaaaatttccacgTAAAAGGTATTTACAGAGACACGTGATGTCCCACACCGGAGAAAAGCCATTCGAGTGCGAAATTTGTCACAAAAAATTCACGCGGAAAACACATCTACAGAGGCACTCGATGACTCACATCGTTAAAGAAATAATTCCTGAAAAACCGCCTGTAAAAGTATTCTTCCCGCTTGACTTGGTAACGCATGTGGGCAATGAGCCGCTCGTATGCAAAATTTGCGGAAAAGAGTTTTCCAAGAAGTCGAATCTGGTACGACACTTTCGGTACCATACAGGAGAAAAACCCTTTGTATGCAATATTTGCTACAAACATTTTTCACAAAAGGTCCACTTGCAAAGGCACTTGGGAAGTCATACAAATGTACATCTAGTTATAAACCCAGAAGTAATTACGTAG
- Protein Sequence
- MSNSRKKEQEIVIVIKEESQDEIEDEQFPSCIQFVSDDIHNNCEIKMKMKSSECELSEEVFIKFETGNDSNGRSLSIKPCDNQLSLSESTQTFSTEEKLFTCEICNKTYTKKVNLQRHFRNHMGVKPYPCETCGKKFSQKADMQRHLKIHTGEKLFSCEICDKKYTEKANLVRHFRNHTGENPFACDTCGRKFSRKTSLQRHIKIHTGEKPFSCEVCEKKFLQKADMLRHLRSHTGEKPFGCEVCGLRYTEKINLERHFRFHTGEKPFACNFCQKKFPRKRYLQRHVMSHTGEKPFECEICHKKFTRKTHLQRHSMTHIVKEIIPEKPPVKVFFPLDLVTHVGNEPLVCKICGKEFSKKSNLVRHFRYHTGEKPFVCNICYKHFSQKVHLQRHLGSHTNVHLVINPEVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00268845;
- 90% Identity
- iTF_00268845;
- 80% Identity
- iTF_00268845;