Cfla020860.1
Basic Information
- Insect
- Cantharis flavilabris
- Gene Symbol
- -
- Assembly
- GCA_949152465.1
- Location
- OX424437.1:34202885-34204177[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.13 5.2e+02 2.0 0.1 21 46 120 145 112 151 0.84 2 10 0.021 84 4.5 0.0 21 46 148 173 144 180 0.85 3 10 0.0015 5.8 8.2 0.0 23 46 178 201 172 207 0.84 4 10 0.00014 0.56 11.5 0.3 21 45 204 228 200 236 0.86 5 10 0.036 1.4e+02 3.8 0.3 21 44 260 283 252 291 0.85 6 10 0.089 3.5e+02 2.5 0.0 21 45 288 312 284 318 0.89 7 10 3.5 1.4e+04 -2.6 0.0 23 44 318 339 311 343 0.78 8 10 0.025 99 4.3 0.2 21 46 344 369 335 375 0.80 9 10 0.0022 8.6 7.7 0.0 21 51 372 402 368 403 0.87 10 10 3.7e-06 0.015 16.5 0.6 22 44 401 423 398 429 0.88
Sequence Information
- Coding Sequence
- atgattaaaGTGGAACCTTGGGATGAATTcgaagaaaataaacaaattttatgcatTTCCCAAGACGGAAATGACCCCAACTGTAGTATTGACATTAAGACCGAACCAAAAGAAGGTAACGACAGTGGATATTACTCGATCACCattaaagaagaaattgaaCCGCTGGAAGATGAATTTTACGACGAATTGGAAAcagaaataaaaccaaacatatTTGCGTGCGCACTAACGGTCCCAAATAACTTACAGACGGAAACAATTCATACAACCGACAGATTATTATTTGCATGTGAATTTTGTAACTCCAGATTTTCGATTAAATCCCAATTGGAAAGGCACCTGAGAacccataccggcgaaaaaccttTCATATGCGAATTTTGTACCTCAAAATTTTCAGAACGCAGAATCTTGCAGGAGCATCTGAGGACCCATACTGGTGAGAAGCCGTTTTTGTGCAAAGTTTGCGACCTGAAATTTTCCCAAAAAGGCAATTTGCATGCACATTTAAGAACTCACTCCGGATTGAAACCGTTCGACTGCGATACGTGTGATgccaaattttcacaaaaaggAAATTTGCAGAGGCACTTGAGGACACATACAGGTGAGAAACCTTATTCTTGTAAAATTTGCCATCAAACGTTTCGAGAAAACAGAAGTTTGCAAGGTCACTTACGAAGTCACACAGGTGAAAAACCATTCGAGTGCGTACTTTGTGACTTTAAATGTTCCTACAAATTAAGCCTGCAAACCCACTTGAGGACGCATACAGGTGAAAAACCACACGCTTGTTCCCTATGCGATTTCAAGTGTTCACACAAAGTTAGTCTGCGGAGACACATACTGACCCATACgggtgaaaaaccatttatgTGTGAAGTATGCAAACTGAAATTTTCTCAAAAGGGACACATGCAACGTCATATGAGAACCCACACGGGCGAAAAACTGATCGAGTGCAAATTTTGTAACGCAAAAGTCTTGGACAAAAGAATCATGGAAGAACACATACGCactcatacgggggaaaaaccttTCTCTTGTGACTTTTGCGATTTCAAGTGCTCGCACAGGCAAAGTATGCGAAGACATCTGAGAACTCATACAGGTGAAAAACCTTTTGCGTGCCGggtttgcaatttcaaattttcacaaaaagaTACTTTGCGTGAACATTTGAATATTCATACGGGCGATAAGCCGTATACATGCGGAATATGTGGCTTTAAGTGCTCACAAAAAAGAAATCTACGAAGACACGTTAGACATCACATGGTGGAAAAGTAA
- Protein Sequence
- MIKVEPWDEFEENKQILCISQDGNDPNCSIDIKTEPKEGNDSGYYSITIKEEIEPLEDEFYDELETEIKPNIFACALTVPNNLQTETIHTTDRLLFACEFCNSRFSIKSQLERHLRTHTGEKPFICEFCTSKFSERRILQEHLRTHTGEKPFLCKVCDLKFSQKGNLHAHLRTHSGLKPFDCDTCDAKFSQKGNLQRHLRTHTGEKPYSCKICHQTFRENRSLQGHLRSHTGEKPFECVLCDFKCSYKLSLQTHLRTHTGEKPHACSLCDFKCSHKVSLRRHILTHTGEKPFMCEVCKLKFSQKGHMQRHMRTHTGEKLIECKFCNAKVLDKRIMEEHIRTHTGEKPFSCDFCDFKCSHRQSMRRHLRTHTGEKPFACRVCNFKFSQKDTLREHLNIHTGDKPYTCGICGFKCSQKRNLRRHVRHHMVEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271686;
- 90% Identity
- iTF_01292454;
- 80% Identity
- iTF_00268948;