Basic Information

Gene Symbol
ARID5B
Assembly
GCA_949152465.1
Location
OX424436.1:40183428-40186432[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 4.4 2.5e+04 -3.2 0.0 35 50 49 65 45 70 0.79
2 2 1.4e-24 7.7e-21 75.4 0.0 1 89 162 248 162 248 0.93

Sequence Information

Coding Sequence
ATGATTGTGAAATTTAGAATTAATTACTGTTATTATATTACAGATTcgaaatataatacaaaatcatCAGTGGTTATATTAAGCTACTCCGAGTATTGTCGTTACCGTTCAATAATGAAACGATTGGAAGGTGTGGAGGAGCAATACTTAAAAAACACAGTAATAAAGCTTTTGGGTGGTTTCTCTGCGCCAAATGAAAATACCCGAGTTTTGTTCTGCAGAGATACATTCGAATATCCCGAACTAGAAGGACACGAACTTTTGTGTAATCACTTGGCGCCCAAATTAAAAGGACGACCCCGAGGTCGTCGAAAAAAGCGTAGTTTATCTCCGGGATCTGAGAGCAATGAATCAGAATGTTCAGTTTCGAATACAGTTAGCACTACCAAAaccAAAATAATGACTGAAGGTAATCCTAATGGATTCCGATCTGAATGTGGTATTTCTACTAGACGTAGTACACGTGCAACTATAGGAAACacagaaaataaagaatttattaataaattaatcgcTTTCATGAAAGCGAATCATACGCCGATGGGTCGAATACCATCATTGGGTTATAAAGAACTGGATCTTTACTCGTTTTTCACGAAAGTTGAAAAATTGGGTGGATACGATGCAGTTACAACGAATCGATTATGGAAATCCATTTTTGATGATCTCAGTGGCAATTACATTAGTACAAGTGCAGCTACCGTTATTAGAAGACATTACGAAAGatttttgttgCCATACGAACGCTATCTTAAAGGAGAAGAGTACAAACCTATCTCGTCAATTAAGCGAATCAAATGCAGTTCTGGTAGTGGAAGCGATGCGGAAACCAGCGAAGGTACAAGTTGTAGCGGTAATAGTACACCTGTACCCCAACTTGTACCGGCCTCTCTTCCATTCTCGTCCACAGAAAAGGAATCCAAAAATTCAAGATTATCGGAAAGCAGTAGTGATAGGGGAAAATTTGAAGCAAAAACGTCGTCCCTTCGAAGTGTCCGTTTAAAGTCCGAACGCTTACGAGAAAATTCATCCAAAGAAACTTCGCCAccaataaaaattcaagaaaacgtaaaatatacagaaaataataataaaatactaaaagatGAAAATATAAACAGTAACATTGAGTTAAAAGGAAACGGTTTAACAGTggaagttattaataataaaaatattgtgccAGAAGTAAAAGAAGAAATAGTGAAAGTTGAAGATGAACCCGCTCTTACGGTTAGTGTACAAAAGTTAGGGAAAACTCAAGCGTTAAGTCCGGAAGAAGTTAAGGAGAATATCGCGACGTGCAATACGGATGCGTGTCAAAACAATTCTGACGTTGATCTCACCGAGGTGCCATACAGACCAAAAACGGAAACGATAGTGTTGGAAACGGAAGGTTCCGTTAACAATTCAATATTACATAGTTTTAAGAAgcgtaaattggacattttaaAAGAGGGTGGCTTGGAAGTGACACCGGTTAAGCCATCTTCTGACGGTAAAGAAGTTAAAGATAGCAACAGGCCTAGCGTTATACACCAACCTGGCGTTGTAACGACGACAGTGGGGCAGCTTTCCATAACTTTAACGCCAGACAAACAAGAAACCAACGGtgatatacaaaatttaccGGCGAATGTAACGGGAATGATACGATCGAATTACAAAACGCCAATTAAGAAAAACGTGACGCCTATGAAAACTTCGTTTCCATATTTGAACGGCCAATCGTCGCCAATTCCTATTCAGTCAAAATCGATATATTCGTACTCTGAAAAAACCATATATGGAAATCCTAAGGATTATTTCATGCCTCCTCCGCGACCGCCACCACAAGTTCCCAAATTTGTGGACACTTCTCATAAACAAACCGGAGGGGATATTTTAGACTTGACAATAAGGAGTCCACAAAAGCCAATAGTGGAAATCATGAGAGTGCCGCAGAGCGCGACGCGCTCACTTGTGAACCATAAAGATTCTTCTCATAGGAAAGACTACAAAAATATGGCAGCTTCCTTGCCGGTGTTGGACGCCCGAGTTGGTTCAAATTTAGAAATCACTTTGGTAGGTTCACAAAATTCGCCCCAACAAACGAAACTACCAGGTCGACCGCCACAGTTCGTTCCTGGACAAACACTTATGGGCAACATGAATCAAAAGTAcggaaattataatattaacaataaaagtaTACCGAAGCGACCTCCCCAATcaacagaaaacaaaaaagaGAATGGACGATTACCTTACCAACACATGACTCCCCTACCGTCGTCTTTTCCAACCGACAACCGGCATAGGTCTAATTCCTTTAATAGGCATTTAcaccaaaaaattgaaaatcgaaCTAAATCATCGAGCGGTTCGATGCAACATCAAAATGCACCTAAATCAAACAACTCCTCCTCCCATTTAATGCCCGAATATCTGAACCAACTTTCGATGGCTTCAAAAATGATGCCACCTTATGTACCACCAATGGATCCCATGTACTTTTCggcttttcaaaatttatacccACATGGTTCACTTCCGAACATGCAACCTTACTTTCCCGTTCCAACACCGGAACAACTTCAGTTTTATACCGAGTTATTAGCCCACAATTCGCAAATGCGATTTCCGTTTCCTTATCCACAAGATTGCAATCCTTCATTATCAAATGGCGCAGCTGAAATCaataggtataaaaaacaataa
Protein Sequence
MIVKFRINYCYYITDSKYNTKSSVVILSYSEYCRYRSIMKRLEGVEEQYLKNTVIKLLGGFSAPNENTRVLFCRDTFEYPELEGHELLCNHLAPKLKGRPRGRRKKRSLSPGSESNESECSVSNTVSTTKTKIMTEGNPNGFRSECGISTRRSTRATIGNTENKEFINKLIAFMKANHTPMGRIPSLGYKELDLYSFFTKVEKLGGYDAVTTNRLWKSIFDDLSGNYISTSAATVIRRHYERFLLPYERYLKGEEYKPISSIKRIKCSSGSGSDAETSEGTSCSGNSTPVPQLVPASLPFSSTEKESKNSRLSESSSDRGKFEAKTSSLRSVRLKSERLRENSSKETSPPIKIQENVKYTENNNKILKDENINSNIELKGNGLTVEVINNKNIVPEVKEEIVKVEDEPALTVSVQKLGKTQALSPEEVKENIATCNTDACQNNSDVDLTEVPYRPKTETIVLETEGSVNNSILHSFKKRKLDILKEGGLEVTPVKPSSDGKEVKDSNRPSVIHQPGVVTTTVGQLSITLTPDKQETNGDIQNLPANVTGMIRSNYKTPIKKNVTPMKTSFPYLNGQSSPIPIQSKSIYSYSEKTIYGNPKDYFMPPPRPPPQVPKFVDTSHKQTGGDILDLTIRSPQKPIVEIMRVPQSATRSLVNHKDSSHRKDYKNMAASLPVLDARVGSNLEITLVGSQNSPQQTKLPGRPPQFVPGQTLMGNMNQKYGNYNINNKSIPKRPPQSTENKKENGRLPYQHMTPLPSSFPTDNRHRSNSFNRHLHQKIENRTKSSSGSMQHQNAPKSNNSSSHLMPEYLNQLSMASKMMPPYVPPMDPMYFSAFQNLYPHGSLPNMQPYFPVPTPEQLQFYTELLAHNSQMRFPFPYPQDCNPSLSNGAAEINRYKKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01291257;
90% Identity
iTF_00272241;
80% Identity
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