Basic Information

Gene Symbol
stc
Assembly
GCA_958496255.1
Location
OY292462.1:13515607-13532055[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2 2.9e+04 -4.4 1.6 15 19 614 618 613 618 0.81
2 15 0.054 7.8e+02 0.9 1.4 2 10 645 653 645 653 0.92
3 15 4.1e-05 0.59 10.9 18.1 4 19 661 676 659 676 0.93
4 15 1.7e-05 0.25 12.1 11.8 1 18 712 729 706 730 0.89
5 15 0.92 1.3e+04 -3.0 1.0 8 11 735 738 734 741 0.77
6 15 4e-05 0.57 10.9 14.8 1 18 771 788 771 789 0.98
7 15 2.1e-05 0.3 11.8 13.5 1 19 830 852 830 852 0.87
8 15 2 2.9e+04 -5.4 2.2 6 10 882 886 882 886 0.94
9 15 0.017 2.4e+02 2.5 7.3 1 11 892 902 892 903 0.93
10 15 0.054 7.7e+02 0.9 1.1 2 10 905 913 905 913 0.93
11 15 7.6e-08 0.0011 19.6 14.7 1 19 919 937 919 937 0.98
12 15 0.77 1.1e+04 -2.8 0.8 6 10 966 970 965 970 0.89
13 15 0.11 1.6e+03 -0.1 16.5 1 18 976 992 976 993 0.81
14 15 4.1e-08 0.00059 20.5 14.0 1 17 1029 1047 1029 1053 0.83
15 15 0.0064 92 3.9 5.1 1 12 1059 1069 1059 1069 0.96

Sequence Information

Coding Sequence
ATGTCTCAGTGGAACAACTCATACGCTTACAACAACCAATATCAACAAAATCCGAGCGGCTGGAACGGTGACCCCAACGGCCAATATGTGAATCAAGCCTATTACACCAGACCAGATGCTAATGGCCAGTATGTGAGTTTCAATgagttcattacacaaatgcaGAACAGTAATGTAACTCCACAGACCAATCCTAATACTTTCAACAATGTACAGTATGAAAACTATCCTCAAGGCCAGTATAACTATCAAAATCTTCCTTCAACATCTCAACCACAGCTCAACAATTACAACTATGCACCTTCAGGCATAACCAATGAAACGAATACTTATCCAGTGAACCCACAGAGTCAGTTCAGTGCCCCGCCAGCAGAGCCAACGACATTCACAAACAGCATGCCCTTCAAATCTAACCTTACAGCAACTGCACTTGAATTTGTGCCAAAAGGTGCTATCCCTAAATCATCCACTAGTCAAAACATTCCAGACACTTCCAGTAGTAACAATGATGTGAGTGAAAGTGGCAACGAGGTACGGACTAACTACACCAGCTCATCAGATCGCAACTGGAGACAGAGACCACTGTGTTCCATTCAAAACAGTGATGCAAAAGATAAAACAGCGCCCAATGGACATTCACAGGGTAATAATAAAGGTTATGAGCGTAATGGTCGAGCCCAAAGGAATAATGAAGCCAGTGGAAAGCAAGATAGTAAGCCCCAAGACGACAATAATGTTGGAGAATCCAGCTCTCATAGTGAGTCAGTTAAAAATCAAGATTTAACCAATAAGAGTCAAGATCCAAGTCAGAATGAGTCAAGTAGTCTGAGCAGAGAACCCCGTCAACGAAACCCTGATTCAAACAATAGAAACCAGGAATCTCGACCAAACAataagaatcaagattcaaggtCGAATAATAAGAATCAGGATTCAAGGCAAAGAAACTATGATGATAGAAACCAAGAAGCCAGGCAAAGAAACTATGATTCTAATAGCAGAAACCGAGATTCTCGTCAAAACTATGATTCAAATGGTCAAGACTCAAAGGAAAATGATTCTAATCAGCGCTACGACTCGCGAAACGACCGCAGAAATCAAAACAAGGTTAATTCTAAAGCGAAAGGCAAAGATGAGAATCGGACTTTCTATAACAGTGCTATTAATAAAGACAGTCAAGATGTCCGAAGTGGGAGAGGGGAGAACTCTAGAGATTATACCAGGACTGAAGCACCTAGAGGAGATAGTTACAATCGAACAGAAAATTCTAGAAGTGAAAGCTATACAAGAGGAGAAGGTTATTCAAGAGCTGAAGGTCAAAGAGAAGGTTCTGGAAGGGGACAGAGAAACTGGACAGGTACCCAACGTCCCCGAGGAGACCGTACCCAAGATGATGAGCAGTTTGCCAATAACTATCAGAAAGATGATAGAGAAAGAGAAAGACCTGAGAGAATAGATAGAGGATATGATCGGAACGAAAGAGATAGAGGATATGATAGAAATGATAGAGATAGAGGATATGATAGGAATGATAGAGATAGAGGATACGATAAGGAGAGAGGATATGAGAGGCAGGACAGGGAGAGGGCGCCTAAATCTAATGTGTCTAGTCCCGCCAGGTTCAAAAACAAATATCAGACTGATTTAGCTAACAAAGAAATGACCCAACGGGAGCGTCTCACAGACCAATTAGACAAGGGCACACTAGAGTGCCTGGTTTGCTGTGATCGAGTGAGACAGACTGACCCGGTGTGGTCCTGCTCTAACTGCTACCATGTATTACATCTTAGGTGTATACGAAAATGGGCTATGAGTAGTGTAATTGAGGGCAAATGGCGTTGTCCAGCTTGCCAGAACATAAGCAAGAGCATCCCCAGTGAATACCGCTGCATGTGTGGCGCGCTTCGCTCGCCGGAGTACCAACGAGGCAGCGGCGCCCATACCTGCGGGAAGGCTTGTCGTCGCGAGCGTACCTGCCCCCATCCTTGCACGTTGCTGTGCCATCCTGGACCCTGTCCACCCTGTCAGGCTACCATCAACAAACAATGCGGCTGCGGCGCAGAGACTCGCAGTATAATGTGCAGTAGCAAGCTGCCTCAGATCTGCGGTCGGGTGTGTGGCCGCACCCTCAACTGTAACGTGCACTCGTGTGAGAGCGAGTGTCATGAGGGGGACTGTGAGGATTGCGACAAAATTGTCACTCAAGTGTGTCACTGCCCGGGCGGGTCCGAGCGCACGGTCCCCTGCGACGCTACATCTGGCGCGGTGTCGGCGTGGTCGTGCGGCGCGGCGTGCGGCCGCGTGCTGGCGTGCGGCGCGCACGTGTGCCGCGCGCCCTGCCACCCCCCACCCTGCCAACCCTGCGCACTGAGGCCGGACAACGTGCAAGCCTGCCCCTGCGGCAAAATGCAATTGGACAAGGACGCTCGTAAATCATGCACGGACCCGATTCCTCTGTGCGGCAACATTTGCGCCAAGCCACTCTCGTGCGGTCCCGGCGGGGACAAACATTTCTGCAAGCTCGAGTGCCATGAAGgTCCGTGTCCGGTTTGCCCCGACAAGACTCTCCTACAGTGCCGCTGCGGTCACTCTAGCCGCGAAGTGCCCTGCGCCGAACTGACAGAAATGCTCAACAATGTGTTTTGTCAGAAGAAATGTAACAAGAAACTGTCGTGCGGTCGTCACCGTTGCCGCACGGCGTGCTGCGCGGCCGGCTCGCACCGCTGCACGGTGTCGTGCGCGCGCTCGCTCGCGTGCTCGCTGCATCGCTGCGAGGAGTTCTGTCACACCGGACACTGTCCTCCGTGCCCGCGCGTCAGTTTTGATGAGCTGCGGTGTGAATGCGGCGCCGCCGTGCTCCTTCCGCCGGTGGCGTGCGGCGCCCGAGCGCCCGCCTGCGAGCGGCCGTGCGTGCGGCCGCGACCGTGCGGCCACCCGCCTCACCACTCCTGCCACGCCGGTGCCTGCCCGCCCTGCGTCGTACTCACCACCAAGCGTTGCTACGGAGCACACGAGGAGCGGAAGACCATACCGTGTTCATTAGAAGAGTTCTCGTGCGGTCTGCCGTGCGGCAAACCCCTGCCTTGCGGGAAGCATACTTGCATCAAAACCTGCCACAAGGGACCTTGCGACACTGGCAAATGCACCCAGCCGTGCACGGAGAAGCGTCCCGCGTGCGGTCACGTTTGCAACGCTGCGTGCCACTCGTCGTATGCGGCAGATAGCGCGGGCGCGGCGTGCCCGAGCGGCGCGCCGTGCCGGCAACTAGTGCGCGCCACCTGCCCGTGCGGCCGGCGGCAGGCCGAGCGCGCCTGCAGCGACAACGCACGGGACCTGGCCAGAATCATGAGTGCCTTAGCTGCAACAAAAATGCAAGAGGGTGGAGCTATTGAGATCATTGAACAACGCCCGGGCAACATGCTGAAAACACTAGAGTGCGACGACGAGTGCCGAGTTGAAGCGCGAACTCGGCAGATGGCGCTAGCTCTTCAAATCCGCAACCCCGACGTATCGGCCAAGTTGGCGCCTCGCTACAGCGAACATGTTCGAGCCACGGCCGCCAGGGAACCCGCCTTCGCGCAACAAATACACGACAAGCTCACCGAGCTCGTGCAACTAGCTAAGAAGTCGAAACAGAAAACCCGAGCGCATTCGTTCCCCTCTATGAACTGGCAGAAGCGTCAGTTTATCCACGAGCTGTGCGAGCATTTCGGCTGCGAGAGTGTCGCCTACGACGCAGAACCTAATAGGAACGTCGTGGCCACCGCCGAAAGGGAGAAGTCATGGCTGCCTGCGATGAGCGTGCTAGAAGTGTTGGGTCGCGAGGCCGGCAAGCGGCGAGTCCCCGGCCCCGTGCTGAGAGCGCCGCCGACCGCCCTCGCCTCCTCCAACGCGGCCAGCAACACCAAatctaCAAGTGGCTGGGCCACTCTGACCTCTTCTAAATCTACGAACGCGTGGGGAGCTCGCCCAAGTCAGGCCAAGCCGGCGCCGCCCGAGACTAAGATCGACTACTTCGATAACCCGCCCGACAACTAG
Protein Sequence
MSQWNNSYAYNNQYQQNPSGWNGDPNGQYVNQAYYTRPDANGQYVSFNEFITQMQNSNVTPQTNPNTFNNVQYENYPQGQYNYQNLPSTSQPQLNNYNYAPSGITNETNTYPVNPQSQFSAPPAEPTTFTNSMPFKSNLTATALEFVPKGAIPKSSTSQNIPDTSSSNNDVSESGNEVRTNYTSSSDRNWRQRPLCSIQNSDAKDKTAPNGHSQGNNKGYERNGRAQRNNEASGKQDSKPQDDNNVGESSSHSESVKNQDLTNKSQDPSQNESSSLSREPRQRNPDSNNRNQESRPNNKNQDSRSNNKNQDSRQRNYDDRNQEARQRNYDSNSRNRDSRQNYDSNGQDSKENDSNQRYDSRNDRRNQNKVNSKAKGKDENRTFYNSAINKDSQDVRSGRGENSRDYTRTEAPRGDSYNRTENSRSESYTRGEGYSRAEGQREGSGRGQRNWTGTQRPRGDRTQDDEQFANNYQKDDRERERPERIDRGYDRNERDRGYDRNDRDRGYDRNDRDRGYDKERGYERQDRERAPKSNVSSPARFKNKYQTDLANKEMTQRERLTDQLDKGTLECLVCCDRVRQTDPVWSCSNCYHVLHLRCIRKWAMSSVIEGKWRCPACQNISKSIPSEYRCMCGALRSPEYQRGSGAHTCGKACRRERTCPHPCTLLCHPGPCPPCQATINKQCGCGAETRSIMCSSKLPQICGRVCGRTLNCNVHSCESECHEGDCEDCDKIVTQVCHCPGGSERTVPCDATSGAVSAWSCGAACGRVLACGAHVCRAPCHPPPCQPCALRPDNVQACPCGKMQLDKDARKSCTDPIPLCGNICAKPLSCGPGGDKHFCKLECHEGPCPVCPDKTLLQCRCGHSSREVPCAELTEMLNNVFCQKKCNKKLSCGRHRCRTACCAAGSHRCTVSCARSLACSLHRCEEFCHTGHCPPCPRVSFDELRCECGAAVLLPPVACGARAPACERPCVRPRPCGHPPHHSCHAGACPPCVVLTTKRCYGAHEERKTIPCSLEEFSCGLPCGKPLPCGKHTCIKTCHKGPCDTGKCTQPCTEKRPACGHVCNAACHSSYAADSAGAACPSGAPCRQLVRATCPCGRRQAERACSDNARDLARIMSALAATKMQEGGAIEIIEQRPGNMLKTLECDDECRVEARTRQMALALQIRNPDVSAKLAPRYSEHVRATAAREPAFAQQIHDKLTELVQLAKKSKQKTRAHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATAEREKSWLPAMSVLEVLGREAGKRRVPGPVLRAPPTALASSNAASNTKSTSGWATLTSSKSTNAWGARPSQAKPAPPETKIDYFDNPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
-
80% Identity
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