Basic Information

Insect: Camptogramma bilineatum
Gene Symbol: -
Assembly: GCA_958496255.1
Location: OY292466.1:907381-910078[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.5 2.6e+04 -3.9 0.4 29 34 46 51 41 59 0.54

2 12 0.0083 40 5.1 0.1 18 52 185 220 179 222 0.82

3 12 0.00011 0.55 11.1 0.0 21 46 273 298 269 302 0.91

4 12 0.048 2.3e+02 2.7 0.2 21 46 301 326 299 334 0.81

5 12 0.66 3.1e+03 -1.0 0.1 21 30 329 338 320 342 0.83

6 12 0.014 67 4.4 0.0 18 52 354 388 346 390 0.83

7 12 0.039 1.9e+02 2.9 0.0 21 44 413 436 407 440 0.87

8 12 0.003 15 6.5 0.2 21 52 441 472 434 474 0.89

9 12 0.053 2.6e+02 2.5 0.0 21 44 469 492 467 496 0.89

10 12 0.0084 40 5.1 0.1 21 45 497 521 489 524 0.88

11 12 0.0012 5.7 7.8 0.1 21 52 525 556 521 558 0.89

12 12 0.16 7.7e+02 1.0 0.0 21 45 553 577 551 580 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.5	2.6e+04	-3.9	0.4	29	34	46	51	41	59	0.54
2	12	0.0083	40	5.1	0.1	18	52	185	220	179	222	0.82
3	12	0.00011	0.55	11.1	0.0	21	46	273	298	269	302	0.91
4	12	0.048	2.3e+02	2.7	0.2	21	46	301	326	299	334	0.81
5	12	0.66	3.1e+03	-1.0	0.1	21	30	329	338	320	342	0.83
6	12	0.014	67	4.4	0.0	18	52	354	388	346	390	0.83
7	12	0.039	1.9e+02	2.9	0.0	21	44	413	436	407	440	0.87
8	12	0.003	15	6.5	0.2	21	52	441	472	434	474	0.89
9	12	0.053	2.6e+02	2.5	0.0	21	44	469	492	467	496	0.89
10	12	0.0084	40	5.1	0.1	21	45	497	521	489	524	0.88
11	12	0.0012	5.7	7.8	0.1	21	52	525	556	521	558	0.89
12	12	0.16	7.7e+02	1.0	0.0	21	45	553	577	551	580	0.88

Sequence Information

Coding Sequence: ATGGCTTCTTCAGTGTGTAGGGTTTGTCTGTGCAACAACCTGAAAATGCACCTGATTGAAAACACTCTTCTACAAGAATTATACGAGAAAATTACTGGAACTTTGCTGAGCACAGAGGATGGCCGGCCGACCACAATATGCTACATCTGCAACTCACAGCTGCAGAGGTGTCTCAGGTTCTTCAACATGTGTCAGAAATCAGATAAAATATGCAGAGGACTGTTTGACAGTGGTGTGAAGTTAACACAAGAAACACTTACAATGCACAACTTAGGATGGATGTACAACTTAGAAGCCACAACTGCCAAATGTATATCCACCCTCGACGACTCAACTGATGAATATGATATCCATACATTTGTTAAAATTGAACATTATTCAGAAGATGAGTTTAATGACTCATTTGTGGAAGAAGTTAAAACAGAGGCTCGTTTACTTGATTATAGGATAGATATAAATGACAGGAAAATGATCGCACAAAGTACTGATTATGATAGTTTAAATTCCAGCtgtaaaagcacaaaaaagattgTCACCAAATTAAAAGAAGAACAAACACAGTCAGAAAAGAAATTATACAGCTGCAACATTTGTGACAAAAAACTAACTCAGGAATATTATTTGGCAAGACACATGAAGATTCACGCAAGAGAAAAACCATTTAGCTGCAGTTTGTGCGATAAAGAATTCTCTCTTAAAGATGAATTGCGGCAACACAAAGCAACACACATCGGGGACAAGCCGTTTGAATGCAACACATGCCAGAAAAAATTCACTCTGAAACATCTCTTAAAAATACACATGAAAATACACAGTGGTGAGAAACCACATACCTGCGAAATATGCAATATGTCATTCACACAAAGTACCACCTTAAAAAATCACGTAAGAATACACACAGGGGAAAGACCATTCTCTTGCAATATATGCAATGAGGCATTCAGCCGAAAGCACTCACTAAAAACTCATATGAGAACTCACACAGGCGAAAAGCCATATATTTGCAGTATATGTAATAAAGGCTTCTCCTTAAACAGTGGTCTCATAACACATATGCAACGGCATTCGGGAGAAAAGCCGATCGCGTGTAAAGTTTGCAACAAAACATTCGCTGTGAAAGATGGTCTCAGATCTCATATGAGAATACATCTTGGTAACAAGCCATTTATCTGTAGTGAATGCGGAAAGTCATTTATTGATAACGGGCAATTGACTGTCCATATGAGAGTGCATTCTGGTGAGAAACCACACAGTTGCACTTTGTGTGACAAGTCGTTCACTCAGACATCTGCCTTGAAAAGCCATATGCGGACACACACCGGAGAAACTCCGTACAGCTGCCACATTTGCAGTAGATCATTTAAGCACAGCAATACCTTATCCTACCACATGCAGCTACACACAGGGGAAAAGCCATTTATTTGCCACATATGTAGCAGGTCGTTCACTCAAAAATCACTCTTAAAGAAACACATGGTGACACATTCCAACGAGAAGCCGCATAGCTGTGAGATTTGCAAAAAGTCATTTAATCGAAGCACTTGTTTGAAAAATCATATGAAAACCCACACAGGAGAGAGGCCGTACACGTGTGCAGTTTGTGGTAAATCATACACTCAAAACTCAACATTGACACAGCATTTGAAAATACACACCGGGGAAAAACCACATATCTGCACCGTTTGCAATAAATCGTTCACTGAGAAAACTACCCTAAAAACACACTTGAAAACACACACTGATAAACTATCTATAACAATGTAA
Protein Sequence: MASSVCRVCLCNNLKMHLIENTLLQELYEKITGTLLSTEDGRPTTICYICNSQLQRCLRFFNMCQKSDKICRGLFDSGVKLTQETLTMHNLGWMYNLEATTAKCISTLDDSTDEYDIHTFVKIEHYSEDEFNDSFVEEVKTEARLLDYRIDINDRKMIAQSTDYDSLNSSCKSTKKIVTKLKEEQTQSEKKLYSCNICDKKLTQEYYLARHMKIHAREKPFSCSLCDKEFSLKDELRQHKATHIGDKPFECNTCQKKFTLKHLLKIHMKIHSGEKPHTCEICNMSFTQSTTLKNHVRIHTGERPFSCNICNEAFSRKHSLKTHMRTHTGEKPYICSICNKGFSLNSGLITHMQRHSGEKPIACKVCNKTFAVKDGLRSHMRIHLGNKPFICSECGKSFIDNGQLTVHMRVHSGEKPHSCTLCDKSFTQTSALKSHMRTHTGETPYSCHICSRSFKHSNTLSYHMQLHTGEKPFICHICSRSFTQKSLLKKHMVTHSNEKPHSCEICKKSFNRSTCLKNHMKTHTGERPYTCAVCGKSYTQNSTLTQHLKIHTGEKPHICTVCNKSFTEKTTLKTHLKTHTDKLSITM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00661534;
90% Identity: iTF_00267392;
80% Identity: iTF_00267392;