Cbil023435.1
Basic Information
- Insect
- Camptogramma bilineatum
- Gene Symbol
- -
- Assembly
- GCA_958496255.1
- Location
- OY292475.1:1425902-1427197[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.15 7.1e+02 1.1 0.0 21 46 6 31 2 34 0.87 2 10 1.4 6.6e+03 -2.0 0.0 23 44 64 85 53 89 0.77 3 10 0.021 1e+02 3.8 0.0 21 46 90 115 82 121 0.83 4 10 0.063 3e+02 2.3 0.1 21 45 118 142 113 149 0.82 5 10 0.071 3.4e+02 2.1 0.1 17 45 229 258 216 265 0.76 6 10 0.0021 10 7.0 0.0 20 45 261 286 245 296 0.82 7 10 0.46 2.2e+03 -0.5 0.0 22 45 291 314 287 317 0.81 8 10 0.0002 0.96 10.3 0.0 21 45 318 342 304 349 0.88 9 10 0.36 1.7e+03 -0.1 0.1 22 33 347 358 343 372 0.74 10 10 0.0078 37 5.2 0.1 21 43 374 396 361 405 0.86
Sequence Information
- Coding Sequence
- ATGCGGACCCACAATAATGATAAACCATATTCATGTACAGTGTGCGACAAGAAATTCCATGAAAATTATAAACTTAAAAACCACATGAAGCTCCATGAAAATGAAGACCTAGATTGCGATATGTGTGATGAGTCATTTTCTGATAGCCAACAGTTAGAAACGCACAGTAATACAACACATGCAGGAACCAAACCATTTGTTTGTGAATTATGCCATAAAAGATTTGCATTTAAGTCTAAATTAGACAGGCACGTGCGAACACACACTGAGGAAAAACCATATCCATGCGATTTGTGCGACAAAACCTTCGCTGAAAGCGGAAACTTGAAAACCCACAGAAGAGTCCACACAGGCGAAAAGCCCTTTTCCTGTGATATATGCCAAAAGCGATTCACAACCAACAACACTTTAAAAACCCACATGTCAATCCATTCAGGAGAAAAGTCATTTGCATGCGGCAAATGCGACAAATCATTCACAGCCATAGACTATTTAAAGCGTCATAAAAAAATCCACGACACGGACGGCAAAGCCACGTTTAATTGCACTTGTGATCGTTGCGGTAAAACTTTTATGGATAAATGCGCTTTGAAGAAACACATGAAGATACATACGGGAGAGAAGTTGTTTGTTTGCGATATGTGTGATAAGAGATTTGCTGCGAAATCTAAGTTAAAAAGACATGTTAGAAGCCACACAGAGGAAAGGCCTTATGCTTGCAATTTGTGTGACAAGGCGTTCGCTGAGACTGGGAGCTTGAAGACTCATATGAGGACACACACGGGCGAGAAACCATACTCCTGCGACGCTTGCGGTAAAGGCTTTGCTCAGTCCAATTCGTTGAAGAAGCATCTAACTACCCACACGGGAGAACGACAGTTCGCTTGCGTAGTCTGCTTCAAAAGCTTCGCCGTAAAGAATAACTTGACAGACCACATGAGGATTCACAGTGGAGAGAAACCTTATATCTGTAGTATATGTAACCGAGGTTTCGCTCAGTCGAATTCTTTGAAAAAGCATCTTACAACTCATACGGGTGAAAAACAGTTCTCCTGTGTTATTTGTTATAAATCTTTCGCAGCTAAAAACAGCTGGAAAATCCATATGAGAGTTCATAGTGGCGAGAAACCATACGCGTGTAATATTTGTAGTAAGTCGTTTATAGATAGCAGTACTTTAAGTAGACATAAGAGAACGCATACGGGAGAAAACCCGTATGCTTGCATTGAATGCAACAAGTCATTTAGTAGAAAggcttatttacaaaaacatgtgGCGTTTTGCAAACGTCAGTAA
- Protein Sequence
- MRTHNNDKPYSCTVCDKKFHENYKLKNHMKLHENEDLDCDMCDESFSDSQQLETHSNTTHAGTKPFVCELCHKRFAFKSKLDRHVRTHTEEKPYPCDLCDKTFAESGNLKTHRRVHTGEKPFSCDICQKRFTTNNTLKTHMSIHSGEKSFACGKCDKSFTAIDYLKRHKKIHDTDGKATFNCTCDRCGKTFMDKCALKKHMKIHTGEKLFVCDMCDKRFAAKSKLKRHVRSHTEERPYACNLCDKAFAETGSLKTHMRTHTGEKPYSCDACGKGFAQSNSLKKHLTTHTGERQFACVVCFKSFAVKNNLTDHMRIHSGEKPYICSICNRGFAQSNSLKKHLTTHTGEKQFSCVICYKSFAAKNSWKIHMRVHSGEKPYACNICSKSFIDSSTLSRHKRTHTGENPYACIECNKSFSRKAYLQKHVAFCKRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00267393;
- 90% Identity
- iTF_00267393;
- 80% Identity
- iTF_00267393;