Cbil014426.1
Basic Information
- Insect
- Camptogramma bilineatum
- Gene Symbol
- PRDM7
- Assembly
- GCA_958496255.1
- Location
- OY292463.1:14018674-14027937[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.36 1.7e+03 -0.1 0.1 21 44 296 319 288 326 0.83 2 8 0.011 53 4.7 0.1 26 46 329 349 320 355 0.84 3 8 0.0025 12 6.8 0.0 22 44 353 375 348 379 0.88 4 8 0.0014 6.8 7.6 0.0 21 45 380 404 376 408 0.89 5 8 0.0029 14 6.6 0.0 21 52 408 439 404 441 0.84 6 8 0.024 1.2e+02 3.6 0.1 21 44 436 459 432 462 0.89 7 8 0.004 19 6.1 0.1 18 46 460 489 456 495 0.80 8 8 0.0011 5.3 7.9 0.0 22 48 493 519 488 521 0.88
Sequence Information
- Coding Sequence
- ATGACCCTCCCTTCTGGGGTCCGCTTCGGGCCCTACCGAGGGCAACGCACTGACGTCATCGACTCATCCTACTGCTGGCAGATTTACGATAAAAACCGAAAGCCAGTGCATTGTGTAGATGCCGCAGACGCTAATAGGTCCAATTGGATGCGCTATGTGAACTGCGCGCGGCATTGGAGAGAACAGAATCTTGTCGCATACCAGTACCAAGGGGAGCTTTACTACAGAACGATCAAAATAATTCCTCGATTCACGGAGCTTATGGTGTTCTATGGCAGCGAATTCGCTTGTGAATTAGACGTCGATCTCGGCAAATACAACTCACCTGCTGGGTACGCTCAGAAATTTGGTGCACCCGTCGCTAAGAAACTAAAATCGAATGAAAACAGCACAAAAACTGATGAAGAATCAAAAACATCAAACGCCATACAGAAAACTGCTACCAGCGTACCGACTAGTAATCAGATCACTGGACTGGGTACTATTATACCGGATAAAGCGAATGAAACCCTAAAAGGACAAATTAACCGTCCAAGTTTAGAACAAGTAGAATCTGCAAGGACTCTAAACAAAAATATCACTAAGCCAAACAATATAACAAAGAAACGTAAAGGAAACGTTAGTACAAAATGTGATAAAACAGCAAAGAACAATAGCGCCACAAAGAACATCAAACCAAAAACAGCTCAAATTAACGAAAATATGAAACTAAGCACTCCAAATATTGAgttactagataatttaaatACTGATAAAACTGAGGAAGGAAAAAGGAGCGTTGAACCGAATAACGCTTGCGTAAAGGATTTGTACGTCTATTGTGATGATTGCAACAAGAGATGCGTATCAAAACAAGAACTACAAAAACATCTTAGGTTCCATGATAGCAACAGAGCATATAGCTGTGAAATATGCAAGAAGGCTTATAATACaaatattaatttgaaattgCATATGAGAACGCACACTGGAAAAAAGTTGTTCACCTGTGAAATATGTAACAAAGCTTTCATTCAAAATGGCTATTTGAAAAGACATATGAGAACGCACACTGGacaaaagccatttgcctgtgaTATATGTAATAAAGCTTTCAATCAAAATGGTAATTTGAAAACACATATGAGAACGCACACTGGGGAAACGCCATTTGCCTGTAATATATGTAATAAAGCTTTCATTCAAAATGGAGATTTGAAAAGACATATGAGAACGCACACTGGGGAAACACCATTTGCCTGTAATATATGTAATAAAGCTTTCATTCAAAATGGCGATTTGAAAAAGCATATGAGAACGCACACTGGGGAAAAACCATATGTGTGTAATATATGCAATAAAGCTTTCAGTATAAATGATAATTTGAAAACACATATGAGATCGCACACTGGGGAAACGCCATTTGCATGTGAAATATGTAATAAAGCTTGCAGTACCACTAGTAATTTGAAAAGTCATATGAGAACGCACACTGGGGACAAACCATATGCATGTGAAATATGTGATACAAAGTTCACTCAAAGCCACAGTTTAAAATACCACCTCATAAAAACTCACTTGggataa
- Protein Sequence
- MTLPSGVRFGPYRGQRTDVIDSSYCWQIYDKNRKPVHCVDAADANRSNWMRYVNCARHWREQNLVAYQYQGELYYRTIKIIPRFTELMVFYGSEFACELDVDLGKYNSPAGYAQKFGAPVAKKLKSNENSTKTDEESKTSNAIQKTATSVPTSNQITGLGTIIPDKANETLKGQINRPSLEQVESARTLNKNITKPNNITKKRKGNVSTKCDKTAKNNSATKNIKPKTAQINENMKLSTPNIELLDNLNTDKTEEGKRSVEPNNACVKDLYVYCDDCNKRCVSKQELQKHLRFHDSNRAYSCEICKKAYNTNINLKLHMRTHTGKKLFTCEICNKAFIQNGYLKRHMRTHTGQKPFACDICNKAFNQNGNLKTHMRTHTGETPFACNICNKAFIQNGDLKRHMRTHTGETPFACNICNKAFIQNGDLKKHMRTHTGEKPYVCNICNKAFSINDNLKTHMRSHTGETPFACEICNKACSTTSNLKSHMRTHTGDKPYACEICDTKFTQSHSLKYHLIKTHLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00267404;
- 90% Identity
- iTF_00267404;
- 80% Identity
- iTF_00267404;