Cnol002096.1
Basic Information
- Insect
- Campoplex nolae
- Gene Symbol
- bab1
- Assembly
- GCA_037893425.1
- Location
- JBBLXU010000533.1:741630-749784[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.5e-11 3.2e-08 33.2 0.0 2 35 21 55 20 61 0.91 2 3 1.3e-17 1.7e-14 53.2 0.0 1 43 169 212 169 214 0.95 3 3 2.7 3.6e+03 -2.2 1.4 6 15 287 296 285 299 0.88
Sequence Information
- Coding Sequence
- ATGCCTCAATTTTTAGCCGACTATTCGAGCCTGTTGAAGCTGAAGGCTCCGACGTGGACACGTCACGATCTTCAAGAGGCGATAGAAGCCGTGGTAACACAAAAAATGCGCTTCACCCAAGCTTCGACCAAGTACGGAATTCCAAAAGGCACGTTGTACGACAATATACTTGGAAAATCAAAGCGGATGATGGTACTCGAAGAGGCTGCTTTGAAtaacgacgaagaaaacgCAGTTTTGGAATTTTGCTGTGACATTACCGTCAGTCCGTACAATCGACGTACGAAAAAGTCGTTAAACGCTATTTTAAATTACGTCGAAAAGCTCAGACGAAGAAGAGATCCCGGATTCGTTTTTACCGGCTTATCAGGCTTTCGTTGGTGGTGGGCTTTTTCAGACAGTTATCAGTATCAACTACAATCGCTATGGCAAAAGTGTTGGAACACGAATTCTGGACTGGTTCACAATCTACGATTTCGCGAAAGAGGACCACTGAAATCTTGGCGACCCGAAACCATGGCCGAAGCGATTTTCAGCGTTCTCAAGGAAGGACTTTCACTCAGCCAAGCTGCCAGGAAGTACGACATACCGTATCCAACGTTCGTACTGTACGCGAACCGAGTGCACAACATGCTCGGTCCAAGCGCCGATGGCGGGGCCGATCTTCGACCGAAGGGTCGTGGAAGACCACAAAGGATTCTACTGGGTGTCTGGCCCGATGAGCACATACGCAGCGTCATAAGAACCGTCGTGTTTCGCGATGGCAACATCAAGGAGGAACCAACACCGATTTATCCGAGCCTGACGAATTACGCTTGCAACGGTCCCGAGGGTGCGGTCAGTCCCGGTGCCGCAGCCGCTGCTGCGGTCGCCGCGGTCGCTCAAGGTCTCCGGCATCAAATGTGCAGTATGGTAGCAGCGGCCCAGTCGCACCAGCACGACATGATAGCGACGAATTTATCAGCAAATTTTCAAGCAGCGGTACAAGTGAGTCAGCATCATTTGAACAACAACAGTCCGCcgagcagcaacaacaacaacaacaacagcaatagcaacaacaataataacaacaataacaacaatagTAACAGTAACAACAGGAATTCGCCATTGATGTTGGGTCTGCCGAGTCCAGGTTCGGGAGGTCCGCCGGAGAGTCCTATCGAGGGTAGTCCATTGGCGAGTCCGTTGGCGCCGTTGATGGATCCGGCTCACATACCGAGCAGCGTCGAGGTCGGGATAGGAGTTAGCGGAATGACCTACAAACCGAATCGAAGTTTCATGAGTCCCCGGCcggacaatatttttcaagaggaCATTTCGGAGCTGGTGAAAAGCGCCCATTCACACAAGGACAAAGACAAAATTCCGGTGAAACTGGAGCCCCTGGGAGAATCGCGAagcgagcaataa
- Protein Sequence
- MPQFLADYSSLLKLKAPTWTRHDLQEAIEAVVTQKMRFTQASTKYGIPKGTLYDNILGKSKRMMVLEEAALNNDEENAVLEFCCDITVSPYNRRTKKSLNAILNYVEKLRRRRDPGFVFTGLSGFRWWWAFSDSYQYQLQSLWQKCWNTNSGLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRSVIRTVVFRDGNIKEEPTPIYPSLTNYACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAQSHQHDMIATNLSANFQAAVQVSQHHLNNNSPPSSNNNNNNSNSNNNNNNNNNNSNSNNRNSPLMLGLPSPGSGGPPESPIEGSPLASPLAPLMDPAHIPSSVEVGIGVSGMTYKPNRSFMSPRPDNIFQEDISELVKSAHSHKDKDKIPVKLEPLGESRSEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00380983;
- 90% Identity
- -
- 80% Identity
- -