Basic Information

Insect: Campoplex capitator
Gene Symbol: ush
Assembly: GCA_037576405.1
Location: JARBWI010000004.1:4732430-4740775[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0047 0.53 11.2 0.0 2 20 311 329 310 331 0.92

2 8 6.5e-05 0.0073 17.1 0.4 1 23 364 386 364 386 0.98

3 8 0.091 10 7.2 1.6 3 20 433 450 432 452 0.93

4 8 0.0078 0.87 10.5 4.3 2 21 663 682 662 683 0.94

5 8 0.052 5.8 7.9 0.0 3 20 710 727 708 729 0.91

6 8 0.016 1.7 9.6 0.0 2 23 768 789 767 789 0.95

7 8 0.0084 0.93 10.4 1.4 1 23 795 817 795 817 0.99

8 8 0.089 9.9 7.2 0.5 3 21 917 935 916 936 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0047	0.53	11.2	0.0	2	20	311	329	310	331	0.92
2	8	6.5e-05	0.0073	17.1	0.4	1	23	364	386	364	386	0.98
3	8	0.091	10	7.2	1.6	3	20	433	450	432	452	0.93
4	8	0.0078	0.87	10.5	4.3	2	21	663	682	662	683	0.94
5	8	0.052	5.8	7.9	0.0	3	20	710	727	708	729	0.91
6	8	0.016	1.7	9.6	0.0	2	23	768	789	767	789	0.95
7	8	0.0084	0.93	10.4	1.4	1	23	795	817	795	817	0.99
8	8	0.089	9.9	7.2	0.5	3	21	917	935	916	936	0.92

Sequence Information

Coding Sequence: ATGGAGCGATCTAAAgtcaattcgaaaaaatcattgactGGTAACTTCCTGAGAAGGCGAGTATCGAATCAGAAGTTAAAGCCCATGGATTCTGGTGGATCAGGCTCTAGGGCTCAGCGACCGGAGCACAAGAGAGCTTGGGAAGACGAGGAATGGAGCGACTCGGAGAAAACGCCATCGGTGAGCAGCGGTTTGGAGGGCGGAGGTTCAGCAGTTTCGAGTCCGGTGGCACCAAACGTCGACGAGGACTCGAATCAGCCACCACCTCCGAGACTTACGACAAACAATTCCACCAACACAAATACAAACACAACTAACAGTGGATCGGTAGGATCGAATACGACGACGATACCGAACTCATCCGGCGAGGACATCAGATTACGTCTGAGTGTACTCAGCGAGGACGCCAGGAAACGATTGGCCAGTCTGACCGAGGATTTCGAGaTCGCGAAAGGAATTCGGGAGCGTCAAGGAACGGAAAAAACAACGGGACGTGGAAACAGGACGCGAGATTCGAGTCCGAGATCAACTAAAACGGACGTCGACGAAGACGTTGTCGTGTGCAGTCCACGAGGATTTAAGGATAACGAGGATAATCAAAAATCGTCGACTCGACGACGTGATGGTAACAGACGAGAATCGGAAGATTCGAGACGGACCGATGATCTTCCATCGGAAGCCAAAAAAATACGTCTCGATGATGACGCCGCACCGAGACTCCGACTCAACGCTAGTCTTGCCACGGATCCGGCTCTCAGACCGGCAACCGTTGCAGCTCTTACAATCAAGCCTGAAAACGTTTCGCCACCTAATTCGACACCCGCCCTACCTCCAGGTCTTCAAAATGCCATAGCATCAGGACGTTTATTCGTATTACCAACGGAAGGCAAAGAGTCATTGACACCGGAGCCATCGAGGCCAGCGCCACTGATGTGTCCGCCGTGCGGGATCCGTTTCAGTTCAGCGAGTACGTTGGAGGCTCATCGTACGTTTTATTGTGCGCACAGGCCTCGTTTGGAGGAGGAAAATGCGAACAACGAGGAGGACGACGAAAAGACGGGTGGAGCGAAGTACGATTCGCGCAAAGCTTATGCATGTCCCCAGTGTTCATACAGCgcggataaaaaagtttcgttgaatcGTCACATGAGGATGCACGCGACGTCGCCGATCGCAGCGACCCCGTTACCGGCGGCGCCGGTTACAACGACTCCGCAGAGTCCGATCGGGAGCGCTAACGTAACTAAATCTTCGAGCTCCTCGAACGGCTCTTTGAACGAAGAAGCCGAGAGATATTGTAGAAATTGCGACATCAGATTCAGCTCTTTGAAAACTTATCGCGCTCACAAAACTCACTATTGCAGTACGAGACACGTCGTAAAAGATGCACCACCGACGACCACCAAAAATTCACCACCCGCCACTTCGAGCCCCGGAGATTCACCGCCCCCTCAACCCTGTCTAGCTCTACCAACGAATCCCATCCTCATCGTGCCCTATTCCCTCTTCCGAGGAGCGAGCGTACTCGCGGCCCCTACTTTACCGACGCCTGACACACCGTGCTTCCTTCTGCCGAACGGCTCCCTCCAGCCCATGACTCGAGGCCCTCCTCCCACAAACGCCCAAAACACCGTTCAAGATCCCCCCGCTGTACTCAGGATAGCAAACAAACCAGCGACCCCCGTCGTAATGTCCATTCCCGTCTTATCAACATCACCCTCATCCGGAGCTTCCGCACCCCTCGATCTCAGCGTTCGAAGATCACCCGTTCAACaggacgaaaaagaaaatcgtgtCTCTCCGGCACCATCATCTTTACCCCCGCCTCCTGGCAGCCCCAGATCACGCGGCAGCGCTTCACCCAGAACGAGATCTTTGCCAAATTCACAAACTCAACAACAATCACCCACCACCGAACTCGCACTCAGACTCGCTGAACTACCGCCTCCTCCGGTTCCCAGTGTTCTCGTCAAACAAGGAGTTTCCAGATGCAAAGAGTGCAACATAGTTTTTTGCCGGCACGAAAATTTCATAGCTCATAAAAAGCATTACTGCCAAGCGAGAGAAAGTACCGTTTGCAATTCGCCACCACCGGGTACGCCGTCGCCACCTCTCGTCCAACTGATATGTGCCGCTTGTGGCATTAAATTCGCTTCCATGGACAATCTCGCAGCTCATCAAGCATTTTACTGTCCAAAAAGGCCCGAGCCCCAGGAACATCATACGCGATGTCCCAAATGCAAGACGATGATCGAACCCGGTGGAACGCACACGTGCTCGAGTGGTCCCACAGGTGGATGGAGATGTCCGGTGTGCGGTGCTGTCAGTCCAACAGCGGGTGCGGCTCAACGTCACATGGATGCGCATCAGGGTGTAAAAGCCTTTCGTTGCACGATTTGCCGTTACAAAGGAAACACTCTGCGCGGTATGAGAACGCACATAAGAATGCACTTTGAAAAACGTGGAACGGATCTTCAGGAAGAAAATTACATCACGTGCGTGCTCGACGACGATGCGAGTGTTCCAGCGAGCGAGCCAGCAACAGCAACGACACCGGAGGAAGTACCAGcggaaattcaaataaatggcAAAGCGGAAGTAAGAAAAAGTCCTCCTTTGCCACCGCCCCCACCGCCACCACCAGCGCCACCAGCGGCGCCTCAAACGGTGGGTAAAGTTAAGCAGGAACGCGAAGATACGCCACCGCCCGAGGAGAGTCTCGACCCGAGCAAAACTGGTCCCCGATATTGCCGCTCTTGTGACATAAGCTTCAATTATTTGAGCACTTTTATAGCTCACAAGAAATTCTATTGCTCCAGTCACGCCGGTGAAGCGagcaataacaataacaataataacaacaacaattcGACGACGGCGTCGACGACACCGCCGACTACAACGACTACGAGAACTGCTACGCCTCCGACCGGCAGAACCGAAGCTTCTGTACTCTAA
Protein Sequence: MERSKVNSKKSLTGNFLRRRVSNQKLKPMDSGGSGSRAQRPEHKRAWEDEEWSDSEKTPSVSSGLEGGGSAVSSPVAPNVDEDSNQPPPPRLTTNNSTNTNTNTTNSGSVGSNTTTIPNSSGEDIRLRLSVLSEDARKRLASLTEDFEIAKGIRERQGTEKTTGRGNRTRDSSPRSTKTDVDEDVVVCSPRGFKDNEDNQKSSTRRRDGNRRESEDSRRTDDLPSEAKKIRLDDDAAPRLRLNASLATDPALRPATVAALTIKPENVSPPNSTPALPPGLQNAIASGRLFVLPTEGKESLTPEPSRPAPLMCPPCGIRFSSASTLEAHRTFYCAHRPRLEEENANNEEDDEKTGGAKYDSRKAYACPQCSYSADKKVSLNRHMRMHATSPIAATPLPAAPVTTTPQSPIGSANVTKSSSSSNGSLNEEAERYCRNCDIRFSSLKTYRAHKTHYCSTRHVVKDAPPTTTKNSPPATSSPGDSPPPQPCLALPTNPILIVPYSLFRGASVLAAPTLPTPDTPCFLLPNGSLQPMTRGPPPTNAQNTVQDPPAVLRIANKPATPVVMSIPVLSTSPSSGASAPLDLSVRRSPVQQDEKENRVSPAPSSLPPPPGSPRSRGSASPRTRSLPNSQTQQQSPTTELALRLAELPPPPVPSVLVKQGVSRCKECNIVFCRHENFIAHKKHYCQARESTVCNSPPPGTPSPPLVQLICAACGIKFASMDNLAAHQAFYCPKRPEPQEHHTRCPKCKTMIEPGGTHTCSSGPTGGWRCPVCGAVSPTAGAAQRHMDAHQGVKAFRCTICRYKGNTLRGMRTHIRMHFEKRGTDLQEENYITCVLDDDASVPASEPATATTPEEVPAEIQINGKAEVRKSPPLPPPPPPPPAPPAAPQTVGKVKQEREDTPPPEESLDPSKTGPRYCRSCDISFNYLSTFIAHKKFYCSSHAGEASNNNNNNNNNNSTTASTTPPTTTTTRTATPPTGRTEASVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00266760; iTF_01299585; iTF_00829819; iTF_00439784; iTF_00829068; iTF_00798851; iTF_01129635; iTF_01103140; iTF_01100900; iTF_01103845; iTF_01101646; iTF_01509161; iTF_00262923; iTF_00263839; iTF_01056378; iTF_01057931; iTF_01057198; iTF_00629405; iTF_00051296;
90% Identity: iTF_00262923;
80% Identity: -