Ccap003620.1
Basic Information
- Insect
- Campoplex capitator
- Gene Symbol
- -
- Assembly
- GCA_037576405.1
- Location
- JARBWI010000004.1:9300746-9302457[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-12 1.6e-09 37.7 0.1 6 38 33 64 28 70 0.88 2 2 5.6 5.5e+03 -2.4 0.0 30 38 92 100 92 105 0.83
Sequence Information
- Coding Sequence
- ATGGGTGTCCTACCCATTAAAATTCAGCATTTAGAGTGTCCAGTTCCGGGCCCAGGTCAGCGAACGGGTAAAGGTGCGGATGATCCGGAACTCGTGGTACTCGCGGTGGAAGCTGTCAGAAATGGATTGTCTCTGAGAAAAGCAGCAGCCCATTACGCCGTCTCCAAATCCAGTCTCCATCGTTATCTTCATTTAGATGCGAGTGTGATGGGTTATTTGAATTCACCGAGGGTGACCTACTCTTGCAAAAATTGCGGCAAGATTTACAACTACTATTCGAGTTTGGCGAGACACTTGAAGCACGAGTGCGGCGTTGAGCCAAAGTTCCATTGTCCACTCTGTCCTTACAGAACGAAGCATAAATCGAGTCTGAATACTCATCTCAACGGCAGACACATGAAgattttgaacgatttttacACGATACCGAATGGCAACGAAACAGCTGCTTTGGACGGAAAAGACCTAAAGTTTTTGaacaattaa
- Protein Sequence
- MGVLPIKIQHLECPVPGPGQRTGKGADDPELVVLAVEAVRNGLSLRKAAAHYAVSKSSLHRYLHLDASVMGYLNSPRVTYSCKNCGKIYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKILNDFYTIPNGNETAALDGKDLKFLNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00266084;
- 90% Identity
- iTF_00439392;
- 80% Identity
- iTF_00266084;