Cflo006035.1
Basic Information
- Insect
- Camponotus floridanus
- Gene Symbol
- -
- Assembly
- GCA_003227725.1
- Location
- NW:15038-19495[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.023 1.8 8.6 0.1 3 23 448 470 447 470 0.94 2 10 0.0011 0.09 12.7 2.1 1 23 476 500 476 500 0.98 3 10 0.00052 0.042 13.8 0.9 1 23 506 530 506 530 0.94 4 10 0.0002 0.016 15.1 0.2 3 23 538 560 536 560 0.92 5 10 3.8e-05 0.0031 17.4 1.7 1 23 567 591 567 591 0.97 6 10 0.00016 0.013 15.4 0.7 2 23 599 622 598 622 0.95 7 10 2.7e-05 0.0022 17.8 4.9 1 23 628 652 628 652 0.97 8 10 4.3e-06 0.00034 20.3 0.6 1 23 658 682 658 682 0.96 9 10 4.2e-05 0.0033 17.2 0.9 1 23 688 710 688 710 0.99 10 10 0.78 62 3.8 0.1 1 23 797 822 797 822 0.94
Sequence Information
- Coding Sequence
- ATGTCTTGCAGAGGAGCCGCTGTCATCGCTTGCACGTCGAGACGACGCAGTCGAGAGAAGATTGGCTCCGAGGGAACGGAATGCGTGCCCTCCGACAGGTTCCTTGCCCCTTCGAAAGCGGAGGGGAACGGTAAGAGGGATAGGACAGTTAGGAAGAACGAGGCTTGGCACCAGACGACGGTCAGCAAGAGCGCCGACGTCGTCGAGACGGTAGCCGATTTTGAGAAATGGCTGAAAATGCGCAACACGGAGCCACCGGTATCGTCAAGCATGGACCTGGACGCGGCCAAGGTGGTGGAGGGCGTGGATCGGTATCTGGGCGAGGAAGTGCTGTCGCATGGTTACTTTCTAAGCAAGGATCCGTATGGATTGTCCATCGATATTGATTTGGCCGACACCAAGAAGCTCAATCTATCATCAGGCTACGATCCGATACTGCAGGATCTGACACAGAGTGAAAATCGACTGCTAGAACCTCCATGCGAGAAGGTCGTCGACGAGTTCATGCTGCCAGAATTTCAATTGGATCATCTGGATCCACTGGCAGCTCTCTCATCGGATGACATGATGGTGGCTGGTGAGATCCTGCCATCAACGAGCAATCAACCGATACTAAATCAAATAGAGAACCAAGATGTTGAACAAATGACtccaaaaataaaagttttagagCAGAATAGTCAGGTACCCTGTGAAAAATCTATGCAGGTTTCTCTCAATGAAATACCGGCGAATTTAGGAACCATAAGTAAGATGGAGGATATAAAGTCAGAGCAGGAAACCATGATACAGTGTTCGAGAAGTTCTTCAGAACTCTTCATCGAGTCATTACCGATGGAGGAGAACTCATCTCCAAATTCCATAGAAGCAGATACTCAAAATAGCATAATAGAACAATTAAAGTCGAAAACTAAGATAAAACTTGAACCTCGTATCATTAAAAAGCGTCGACAGATGACGGAGCGATTGGAAAAGAAGTTTGACAAGCACATCAATGGAAAGAATTTTACCGATGTAGATTCACAGGACGGCGTAATGGCTGTAGTTGCCATATCTACCGATAAAATATCCAACACGACACAAATCGTCATCAACACTGGCACAGAGAAACAGATCTATCAGGGCAAGACTTCAGAATTGATCGAGGCAACGGGCAATTTTCCGAAATTGCCCAAGATAGATACTTCTGCTGCGATCTGGAACGGTAACGTTGAGtacaatattgataataatccGAGTAGCTCGTATGAAATTGTCATATCCAATGCGTTGGAGGAACTAGGCATCACCGACGACAGTCTACAACCTGTAAATGTTACCGAACACGACAAAGTATGGCTCTGCCCACGAGCCGGTTGCAACAGGCAATTTGGCAGACTTTATACTTTGAAAGGTCACTTGCTAGCCCATTATGGAGTTAGGCCATTTAAGTGCGACTTCCAAGACTGCACTTGGGCTTTTTATTCCGAGTTCAAGTTAAAGAGACACAAGGAGACTCATCTGAAGCGCAAGGATCACGTGTGCCAAGTGGAGGGTTGCAACCGTCGCTTCACTACTGTTTATAATCTCTGGAGTCACGAGAAACTGCATAGTCGTCCAAATCGGATTGTTTGCCAGGTACCGAATTGTGGCGAGAAATTTCAAACGAAGCGGGCACTGGAACTGCATATGAAATCGCACGATCAACGTCACGCGCCTTATGTTTGCCAACATGAAGGTTGCGGTAAACGTTACTACAGCAGTAATGCATTGACATCGCATCAACGATCTCACAGCTATAAAGAAGTGGATATCAAGTGTTCGTGGCCGGGCTGCGGCAAAGTTTTCGACAAACCATGTCGACTCAAGGCTCACACGCGCTCTCATACCGGCTGTAAACCTTATCATTGTACGTTTCAGGATTGTAAATGGGCATTTTCATCGTCCAGTAAGCTCAAGCGTCACCAAAAGAAACATACCAATGAACGCAAATTCATGTGTGACGCACCGGACTGCGGCAAAGCTTTCATGCGATCGGAACATTTAAAAGAGCATCGGTTGACACATAAGGAAGGTCGCTTCTTCCAATGTTTTGTATGCGATGCCCGGTTCTCTGCCAAGAGCAGCCTGTATGTGCACATTAAAAAGCATCAGCAGACCAAGACGGATATAAGCATAACCGATAATATGCCGACAGAGTTTGATTACATTTCTGGTGATCAGAAACGTGTGAAGACGAAAGAATCTAATTGCTCACGAGTGAAGCCGATCGCGAAACAGAAGCGAAAATCCACGGAATTAACGAGTGTCATAGAAACTATCACGAAGGAAGATGACCTTGAGAAGCCGGATATGATATGTGACACCAGTGCGCGTTCCCAAAATTCTCAGAATCAACTAGAATGGTTGTATCATTGTCCGATAGAGAATTGCGATTATCTAATTGGAAACGAGGCGAGCTTACGCGAGCACCTACTGAAGGTACACAATATACATTGTGACGATTTGCTGGATAAACCTTCGGACGTTGCCGACACAAACTACATTCTGTACACGGTAGACGAGTCGCCCTCGACTTCGCCCATCGCCATCGAGGAAGAACAGACGGTTATGGTGACGCCGTGCGATGCTGTTATCCTCGGTACCTCGTCATCAAGCGTGGATCGTCTACCGGAACCGGAACCGCCTCCTTTCAATTTACTTACTAAGAATTCGGAATCGTTACATACTGATGTGTGTACCGAGCAAATCGATAAGGAAATGCTATCGATTAAGACGGATCAGAGCTCTGCGAGGACAGATCTAACATATTCGGATTGGTCCAGGCTAAAGAAAAACGGCACACTGACGGATTCGATAGTGACAAATACACCGGACATTGCGCTGGGCACGAGTAGCGATCTGAGCGAGAGTCTGTTGCTCACAGAGGAACTACCATCGATGTACTATCAGGACGATGTGGCAGGTACGGAGTATCAGGTGTTATTATTGGACTCAAGTCCGCTTGAGAGTACCGTTAATTTGCGCGGTCTCGAATGA
- Protein Sequence
- MSCRGAAVIACTSRRRSREKIGSEGTECVPSDRFLAPSKAEGNGKRDRTVRKNEAWHQTTVSKSADVVETVADFEKWLKMRNTEPPVSSSMDLDAAKVVEGVDRYLGEEVLSHGYFLSKDPYGLSIDIDLADTKKLNLSSGYDPILQDLTQSENRLLEPPCEKVVDEFMLPEFQLDHLDPLAALSSDDMMVAGEILPSTSNQPILNQIENQDVEQMTPKIKVLEQNSQVPCEKSMQVSLNEIPANLGTISKMEDIKSEQETMIQCSRSSSELFIESLPMEENSSPNSIEADTQNSIIEQLKSKTKIKLEPRIIKKRRQMTERLEKKFDKHINGKNFTDVDSQDGVMAVVAISTDKISNTTQIVINTGTEKQIYQGKTSELIEATGNFPKLPKIDTSAAIWNGNVEYNIDNNPSSSYEIVISNALEELGITDDSLQPVNVTEHDKVWLCPRAGCNRQFGRLYTLKGHLLAHYGVRPFKCDFQDCTWAFYSEFKLKRHKETHLKRKDHVCQVEGCNRRFTTVYNLWSHEKLHSRPNRIVCQVPNCGEKFQTKRALELHMKSHDQRHAPYVCQHEGCGKRYYSSNALTSHQRSHSYKEVDIKCSWPGCGKVFDKPCRLKAHTRSHTGCKPYHCTFQDCKWAFSSSSKLKRHQKKHTNERKFMCDAPDCGKAFMRSEHLKEHRLTHKEGRFFQCFVCDARFSAKSSLYVHIKKHQQTKTDISITDNMPTEFDYISGDQKRVKTKESNCSRVKPIAKQKRKSTELTSVIETITKEDDLEKPDMICDTSARSQNSQNQLEWLYHCPIENCDYLIGNEASLREHLLKVHNIHCDDLLDKPSDVADTNYILYTVDESPSTSPIAIEEEQTVMVTPCDAVILGTSSSSVDRLPEPEPPPFNLLTKNSESLHTDVCTEQIDKEMLSIKTDQSSARTDLTYSDWSRLKKNGTLTDSIVTNTPDIALGTSSDLSESLLLTEELPSMYYQDDVAGTEYQVLLLDSSPLESTVNLRGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00280152;
- 90% Identity
- iTF_00264520;
- 80% Identity
- -