Basic Information

Insect: Camponotus floridanus
Gene Symbol: salm_1
Assembly: GCA_003227725.1
Location: NW:1545496-1613962[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.5e-05 0.0012 18.6 1.0 1 23 380 402 380 402 0.98

2 9 6.3e-06 0.0005 19.8 2.1 1 23 408 430 408 430 0.98

3 9 2.8 2.2e+02 2.0 3.3 3 23 800 820 799 820 0.92

4 9 2.7e-08 2.2e-06 27.3 0.6 1 23 826 848 826 848 0.97

5 9 3.8e-05 0.003 17.4 2.6 1 23 858 880 858 880 0.98

6 9 0.0078 0.62 10.1 3.2 2 23 1184 1205 1183 1205 0.97

7 9 0.019 1.6 8.8 1.0 1 14 1211 1224 1211 1225 0.92

8 9 3.7e-07 2.9e-05 23.7 2.1 3 23 1431 1451 1429 1451 0.96

9 9 1.3e-07 1e-05 25.2 0.9 1 23 1457 1479 1457 1479 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.5e-05	0.0012	18.6	1.0	1	23	380	402	380	402	0.98
2	9	6.3e-06	0.0005	19.8	2.1	1	23	408	430	408	430	0.98
3	9	2.8	2.2e+02	2.0	3.3	3	23	800	820	799	820	0.92
4	9	2.7e-08	2.2e-06	27.3	0.6	1	23	826	848	826	848	0.97
5	9	3.8e-05	0.003	17.4	2.6	1	23	858	880	858	880	0.98
6	9	0.0078	0.62	10.1	3.2	2	23	1184	1205	1183	1205	0.97
7	9	0.019	1.6	8.8	1.0	1	14	1211	1224	1211	1225	0.92
8	9	3.7e-07	2.9e-05	23.7	2.1	3	23	1431	1451	1429	1451	0.96
9	9	1.3e-07	1e-05	25.2	0.9	1	23	1457	1479	1457	1479	0.98

Sequence Information

Coding Sequence: ATGTCACGGAGAAAGCAGGCCCGACCGAGCCGTGCCCATCTCGAGGAGGATCTTGTCCAGGGGCCTCTGCTGATCAATCCCGTTGGAACTGTCACGACCGAAATCCGTGAAGAAAATGACTTCATATCAGATGGTGAGGAAAGCGGTGGTGGGGCAGGAGGTGAGGAAGCCGTGGATCTCACCGCGGCGAGATCTCATCAGGGCGACGAGGACGATAAGGATGCCGACGATCCGTTGGGCGAGGACGAAGAGGACGGCGGCGACGAGCAAGACGAGCAATACGAGGACGAGGAGGGTTCGCGAAAACAGATTCGCCATCGACAGGACGCGGAAAACAACAATAGTTTTGTCGGGAGTGGCTCAACCTCTGCTGGAATATTTCCACCTGCCGGAACTAGTCATGTCACTCTCGAGGCCCTTCAAAATACGAAAGTTGCGGTCGCGCAGTTTGCTGCCACCGCCCTCGCTGGTGGAGTCGATAGCGACGCGGCATTACAGGATTTGGCCTTTCTACAAAGTACGCTGTATAATCTTCAGCATCAACAGGTACTCCAGCTGCAGTTTATCAGCCAGCTTCAGCAACAATTATCGATCACTCAAAAGCAGCCGGTAGCGCAACCGTCATCGATAGAGCCGGCCGATAGCAAGGAGGCTTCGTCATCTCCCATCATCCATCCGAAACCATTGTCGAGTCTCACATCACCACCTACTTCCCGGCCACCGAGTCACCATCATTCATCACCAGCGCCACTGACGCCGAATATACTTCAAGAACGACCCACCTCGACGAGTAGTGCCTCTTCATTGAATCTACCTCTGTCTTCATCCGGCACTACATCGACTACCGCTACGACTACCAGTAGTCAAATCTCGCTGTCGCATCAAATGCCGCCGCTTTGCTCGATCAGCTCTTCTCTCGCCGCGTCGATCATAACGAACAACGATCCACCGCCGCTTCACGAACCGAACACGCTGGAGATGCTGCAAAAACGTGCTCAGGAGGTGTTGGACAACGCGAGTCAAGGTCTATTGGCTAACAATCTGGCCGATGAGCTTGCGTTTAGAGGCAGTAAAGGCTCACGGCTCTCACCTTACGATTCGAAAACGAGCGGCGGTCGAGGCGAGCCCTTCTTCAAGCATCGATGTCGCTTCTGTGGCAAGGTCTTCGGCAGCGATTCAGCGCTACAGATCCACATACGATCCCATACAGGTGAGCGACCCTTTAAGTGCAACGTCTGCGGCAGCCGATTCACCACCAAGGGCAACCTGAAGGTCCACTTTCAGAGGCATACGGCCAAGTTTCCACACGTAAAGATGAATCCGAATCCCGTTCCAGAACATCTAGACAAATACCATCCGCCCCTCTTGCAACAAATTGCTTCCGGGCAACGGCCGATATccccgccgccgccgcctctCTCCATTCATCATCCCTCGTGTCATCCGGCACGTAGGGAGCACAGTTTCCTACCACCACAGCCGCCTTTACCTCTCAGTCTCACTTCGCCTGGCATGATCCTTTGCCGATTACCGGTTATTAATCACCGGGACGATCAGGATGTGCCGGAAAACCTTAGTAAACCCGTAACCGCTGCCCCGCCAATGTCTCCTACTTCCCCCGCTGCTATATCGAACTCTCATCATTCCTTTCACGACAATcatcaacaacaacaacaacaacaacaaaagCAACAACTCGAGCAGAGAGAGGAGATAAAACTCGAGCAAAGATCGCCTGGACAGGACCAGTATCAGCACCGACCGATGAGCCAGGAAGACACTGGACGCATAACCCCGAAGAGAGAGCCCGAAGAGACGGACGAACCTGTGGAAACGGAAGACTGTGAGGATTTTGAAGAGACTACGAGGCGATCTCTAAATTCACCTTCATCCTTGGTGAACCCGTCGTTTCAGCCGCAAACATATGAGGATTGTAGTATGGATAGCAAGATCAGTGGACGGCTAGAGGGCGATGGGGAAATGGAAATAGATGAAGAAACAGAAGAGCAACCGGAGAACCTCTCCGGTAAGGGTACGATCAATCGTTTGCCCCAACAGATGATGGCATATCCCGGAGCATCTCCAGCTAGTAGTAGCGCGAGTAGCGGTAGTCTTCAGACGTCCTTTGCCGGGATTCTATTCCCAAGCGCCCCGGCTCATCATCAAATACCTCCTCATCTTTCGGTGGTTTCTACAGCTGCGCAGACGCCGACCGTCTCCGCAAACGAGATGATCGATCCGGCTAAAGATCCAGCGATTTATTCCAGCTTGTTACCGCGGCCAGGTAGCAACGATAATTCCTGGGAAAGCCTGATTGAGATAACGAAAACTTCGGAGACATCTAAATTGCAGCAACTAGTCGACAATATCGAGCACAAACTGAGCGATCCTAATCAGTGCATCGTTTGTCATAGAGTACTCTCGTGCAAAAGTGCGTTATTAATGCATTATCGCACTCATACAGGGGAACGTCCATTCAAGTGCAAGATCTGTGGTCGCGCATTTACCACAAAGGGTAATTTAAAAACTCACATGGGAGTGCATAGGGCTAAGCCACCGCTAAGAGTGTTACATCAGTGCCCGGTATGTCACAAGAAGTTCACGAACGCTCTCGTACTTCAGCAGCATATACGCCTTCACACCGGCGAACCTACCGATCTCAGTCCAGAGCAAATTCAAGCCGCAGAAGTAAATGAGTTTCCGGGTTGTTATCCTCAACCTCAGCTTTCCTTTTTTCCGCAAGGATTTGCACCAATGCATCCGACCAGTGCTAGCTTTACCTTAGGATTCCCTGGATCTAGGCAGCCGACTATTGAGCAACAATCGCACGAAAATGACGTCGATTTGAAGGACGAATCTCAGCAACAAAGGCAAAGATTTATGGAAGAGCATAGCGAGGAGATGGAAGATCAGGATGACGAGGAGCAGGATCGCAGAGAAGACGACGATAGGTGTGAGATGAATCGCGATAGACATAGTGTCGAGATTGAGAAAGAGCAAGAGCATGAAAACGAGGAGACCGAACATAGAGACATGATACTTCCCATGTTTTCAACTTCTTTGGCGGCTCTCGAAAACCAAGTAAAGACCATCACGACGACGATCGCGACGACCACGATTGCGAATGCAGCCAGATCGCCGCCGTCCTTTCACCGATACAATGGTAGCGAAAAAAGCGACAGCTCGCCCATGTCCGGTGCCCCGCTTGATTTGACACCTCGCGCTTCGTCCACTCCGGCGTCGGTGGCTTCCACGTCGCCGACACCGCCGCCGCTGCCGCCACCGTCCCAGACTGCACCGACGCATCATCCGTCGCATCCCTTCAGCATGTTTGCTGGATTGTTGCAAGCAGTCTCGTCCGCACCCACTACCAGCACGCCAGGCACGTCCAACATAAATAGCGTCACGTCGATGAGTGCGGTCAACCCGGGAAGCGCTCCCGGCAGTGGACCTCTAGCCTCGCTAACCACCTCAGCTGTATTAGCCGCATCATCGACTTACAATCCACTCGGTCTAGCTGTCGGAGGGCCAGCAGTACGTGGCAACACCACTTGCAAATTCTGCTACAAGACGTTCGCATGCCAATCCGCGTTGGAGATACATTATCGGAGTCATACGAAGGAACGACCTTTCAAATGCACTATATGCGACCGAGGTTTTTCCACaaagAACGACGATTCCGGTCAGCAAGTATGTTCCTGCGCGGACCAACCCTTCGCCGCGAAGGGTCCAATCCCCCCACAACCCAATCCCCAATACCGCTCGTACCCGGCGAGACCGGCCGCCGGAAATCGTGAGAAACCGAAACGCAGGCGGCGGCGGCCTGAGGAACGGAAGAACCGGGGGCGGACAGGAGCAGGAGGGGGGCGAAGGCTGACGTCTGTTTATCCTGCCGTCCGCCTGCCCCCGCTGATGCCACCCGCCCTCGGACTTCTACCCTCGGACCACGTCTTCCTGGGTAATATGAAGCAGCACATGTTGACTCATAAGATTCGCGATATGCCGCCGCATCTATTCGGCGATGCaaagcaacagcagcagcagcagcagcaatcacagcagcaacagcagcagcaacaacagcagcaacagcaatgTCAGGATCATGAAACTTCCAGGAGCCCAATGTGCACCGATGATTCGAGCCTGCCACCCCCGCCTccaccgccgccaccgccTCCTCCGATGCCACCTACGTCAATCGAGTCTGCGATACCAATAAAGAGATCTCCGCCGGAAGGAGATTTACCGGCGCCAAAGAGACCAGCCAGCATGCCGAGCAAGCACTTGTGCCAGATTTGCAATAAGAATTTCTCTTCGTCTTCGGCGCTCCAGATCCATATGAGAACCCACACTGGCGACAAACCGTTCCGATGCACCGTCTGTCAGAAGGCGTTCACCACCAAAGGCAATCTTAAgGTACACATGGGCACCCATATGTTCACCAACGGAACGTCACGTCGAGGTCGACGAATGTCATTGGATCTACCTCCTCTGCCAATCACGCCCAAGGACTCGGAATTTCTGCAACGACGACCGGACCTTTTTTACCCATATCTTCCCGCACCATTCCTTAACGGCGTCCAGCAGAAgCTGAACGAGATCTCGGTGATTCAAAGTAACAACGGATTGCCTCCTCATTCCTTGGGCGCGGGCAAATACGCGGCGAGTCTATTCGGCTCGGTGTACGGGGCCGGCGGGGGCGGTTTTCCCTTGGATAAGCAACCGATGGCGCCAACCAGTAACGGACCTCTGGTGGACGGCAAATCCGCTATTCCATCCGGTTCCATGCTCTTCCAAACGCCATCGCCCACGCATTCGCCCGGCGCGCCATCGTCCAATGGCGGTAATCAAAACTCGATTAACGTGCCGTCCTGGACGACTGGCGACGCTCTTCAGCATCACTTCGATCGAGAGACACCAAGCAGAAGCGAGAACGACGCCACGCCGCCCACCGCTGCACGTCTACCACCGCCACCGACGAGGGGAGAGGGATTAGCCGCGTGA
Protein Sequence: MSRRKQARPSRAHLEEDLVQGPLLINPVGTVTTEIREENDFISDGEESGGGAGGEEAVDLTAARSHQGDEDDKDADDPLGEDEEDGGDEQDEQYEDEEGSRKQIRHRQDAENNNSFVGSGSTSAGIFPPAGTSHVTLEALQNTKVAVAQFAATALAGGVDSDAALQDLAFLQSTLYNLQHQQVLQLQFISQLQQQLSITQKQPVAQPSSIEPADSKEASSSPIIHPKPLSSLTSPPTSRPPSHHHSSPAPLTPNILQERPTSTSSASSLNLPLSSSGTTSTTATTTSSQISLSHQMPPLCSISSSLAASIITNNDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRGSKGSRLSPYDSKTSGGRGEPFFKHRCRFCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGQRPISPPPPPLSIHHPSCHPARREHSFLPPQPPLPLSLTSPGMILCRLPVINHRDDQDVPENLSKPVTAAPPMSPTSPAAISNSHHSFHDNHQQQQQQQQKQQLEQREEIKLEQRSPGQDQYQHRPMSQEDTGRITPKREPEETDEPVETEDCEDFEETTRRSLNSPSSLVNPSFQPQTYEDCSMDSKISGRLEGDGEMEIDEETEEQPENLSGKGTINRLPQQMMAYPGASPASSSASSGSLQTSFAGILFPSAPAHHQIPPHLSVVSTAAQTPTVSANEMIDPAKDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLSDPNQCIVCHRVLSCKSALLMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPGCYPQPQLSFFPQGFAPMHPTSASFTLGFPGSRQPTIEQQSHENDVDLKDESQQQRQRFMEEHSEEMEDQDDEEQDRREDDDRCEMNRDRHSVEIEKEQEHENEETEHRDMILPMFSTSLAALENQVKTITTTIATTTIANAARSPPSFHRYNGSEKSDSSPMSGAPLDLTPRASSTPASVASTSPTPPPLPPPSQTAPTHHPSHPFSMFAGLLQAVSSAPTTSTPGTSNINSVTSMSAVNPGSAPGSGPLASLTTSAVLAASSTYNPLGLAVGGPAVRGNTTCKFCYKTFACQSALEIHYRSHTKERPFKCTICDRGFSTKNDDSGQQVCSCADQPFAAKGPIPPQPNPQYRSYPARPAAGNREKPKRRRRRPEERKNRGRTGAGGGRRLTSVYPAVRLPPLMPPALGLLPSDHVFLGNMKQHMLTHKIRDMPPHLFGDAKQQQQQQQQSQQQQQQQQQQQQQCQDHETSRSPMCTDDSSLPPPPPPPPPPPPMPPTSIESAIPIKRSPPEGDLPAPKRPASMPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMFTNGTSRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLPPHSLGAGKYAASLFGSVYGAGGGGFPLDKQPMAPTSNGPLVDGKSAIPSGSMLFQTPSPTHSPGAPSSNGGNQNSINVPSWTTGDALQHHFDRETPSRSENDATPPTAARLPPPPTRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417805;
90% Identity: iTF_00869103;
80% Identity: -