Cfel037366.1
Basic Information
- Insect
- Camponotus fellah
- Gene Symbol
- -
- Assembly
- GCA_030586385.1
- Location
- JAPIVC010000779.1:3102212-3104346[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.28 4.8e+03 -0.8 0.1 27 43 23 39 20 49 0.82 2 3 0.00023 4 9.1 0.1 26 45 51 70 40 78 0.86 3 3 1.3e-07 0.0022 19.5 0.2 12 48 112 148 105 151 0.81
Sequence Information
- Coding Sequence
- ATGGTACaaattaGTTCGGCACAATACAATACGTCAGACTATTATAAGAGACTTGGCAGGCACTTTTGTCCGACATGTGGAAAAGAGTACAGATGGATGCAATCTTTGATCAGACACGAACGGGAAGAGTGCGGAAAGGACCCGCAGTACAGTTGTCCTGTATGCAGTATGAAGATCCGACATAAATGGATGCTGAAGAAGCACCTAATCAAATTTCATCGCATTACAAACGgTTACATCAAGTCCCATAGGCCCCAAGATTACCACAGACGGTACCGTGGCAGATATACGTGCGACGCATGCGGCAAAGAGTACACATGGAAACCATCTCTGACAAGGCACAAGCGCGAGGAGTGCGGTAAGGAACCACAGTACACGTGTCCGATATGCAACGTGAAGATTCGTCGCAGCGGCCAACTCAAGCAACATTTGCTTTATGTTCACAATTGGATGAACAGGccgatgaatatataa
- Protein Sequence
- MVQISSAQYNTSDYYKRLGRHFCPTCGKEYRWMQSLIRHEREECGKDPQYSCPVCSMKIRHKWMLKKHLIKFHRITNGYIKSHRPQDYHRRYRGRYTCDACGKEYTWKPSLTRHKREECGKEPQYTCPICNVKIRRSGQLKQHLLYVHNWMNRPMNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00867788;
- 90% Identity
- iTF_00264616; iTF_00867788; iTF_00731134; iTF_00731061;
- 80% Identity
- iTF_00264616;