Cson004455.1
Basic Information
- Insect
- Campoletis sonorensis
- Gene Symbol
- Prdm15
- Assembly
- GCA_013761285.1
- Location
- JACEOJ010000110.1:510823-514749[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.7 2.2e+02 2.8 0.0 2 23 252 273 251 273 0.93 2 13 0.0039 0.32 11.8 1.6 3 19 282 298 281 303 0.94 3 13 6e-06 0.00049 20.6 1.4 1 23 462 484 462 484 0.99 4 13 0.0067 0.54 11.0 0.2 1 20 488 507 488 508 0.95 5 13 0.00089 0.073 13.8 3.4 1 23 518 540 518 540 0.98 6 13 6.8e-05 0.0055 17.3 5.9 1 23 569 591 569 591 0.96 7 13 4.1e-05 0.0034 17.9 1.5 3 23 614 634 613 634 0.98 8 13 0.19 16 6.4 2.9 1 23 639 661 639 661 0.97 9 13 0.00066 0.054 14.2 0.1 2 23 667 688 666 688 0.95 10 13 0.005 0.41 11.4 8.7 1 23 693 716 693 716 0.96 11 13 0.00028 0.023 15.3 1.5 1 23 722 744 722 744 0.97 12 13 0.0002 0.016 15.8 5.4 1 23 750 773 750 773 0.97 13 13 0.035 2.8 8.8 4.5 1 23 778 801 778 801 0.95
Sequence Information
- Coding Sequence
- ATGCCACCGTTAAGAAAACTTGTGACAATTCCAGATGCAATAGTGTCGATAAATGACACGAAAAATAATGAGAAAACCACGGTCGAATCCTTTTTGACAGTTTGTAGTATTTGTGGCCAAGAGCATGCAACAACAAGCTGTCAATTTTTGCCCAACCTGAAATATGTGAAAGATGAACCACTGCGCTCGAGGGCCAGATTAACCTTGCCAAAAAATCTGGAAATCACAAAAATGGCTGACGGTTCGATGACAGTGATAGCTAAATGTGATTTCCAGCAGGGAACGACTTTCGGTCCGTTGGAAGCTCAACGAGACTGGACCATGAATCCTATGAACGATTTCCCCATTAAAGTTTTCGGGGATGGTCCGACAAATACTTTTCATTTGGACCGCTCAAATGAAGATGCATCAAATTGGATGTGCTTTGTTTCTCCTGCATCTAGTTCTTTGGAACAGAATCTTGTTTGTTATCAGATGGAAAGTGACGTGTATTACACAGCTATGCGATTCATTCCATCCGGCGAAGAACTGAGGGTTTGGTACGCTCCTTATTACGCTTTGAAAATGAAAATGCCACTGTTCAACACAGATTTTGCAAATGTCGGTGAATATTCAGCCAAGGAGGATAATGAGCTCAACCGGTCCGATGACGACACAGTAAATCATTCGGGAAATTCACATGAAAATATTGAAGAAATCGTGCAACGTTTACCGGCTCAACAACTGGGAGCCCGGGGCGACAAAACTAGCTGGAATTGTACGATATGCTCGGTCGTAATAAATTCGGTAATCGAGTATGCGAAACACTTGATGGAACATTACAAACCTCTGTCTGGAGTGTTTTGCGAAATCTGTAATAAAAAATTTTACAGACTCTCGGTTTTGCAAAAACACAAGTGGTCGAAACATCCCGAGGAAAGAACGAACAGCGACGTTGTTGGTATTCCAACGTCGGAAAATCAGCAACAGCAAAACGCTCAGACGATACTCATGAATATGAGCGATTCCGAGGGCCAAACTTCGGAAGCAATGAAAGACATACTCGAAAAATTCAAAGCAGGAAAGTCATTGACCGAATGCAATTTGCTGCCCTCGGGGATTGAAGCAGAAAAAGAAAATCCCAGCGAATTGTCCCTTCTTGACGCACATTCCATAAGCGTCAATGATCTCCTTCAGAACAACGCCACATTGATCGAAAATTCGTCGTTGAAATCAATCTTGGAAAATCAATGCTTAAACATGAGTCTAGAGGCAATAACGGACTCGATGCTCTCGGATAATATAAACGGCGCCGATTCCGTCAAATTCAACGTCGAGGAATTAACTTCGGAGTTTTTGGACATAACACCCGAAGTTGAGAATATTAATCGTAGAATTGTCAATTTTCAATGCGACATATGCGAAAAAAAGTTTGGAAAGGCTGATTATCTCTATCGACACTTGAGAAAACATACCGGAGAGTTTATCTGTCCAAATTGTTTGGGTGTATTCGCGCGAAAAGAAAATTTGATCTCGCATCTGTGCCCTTCGCGAAAGTTTGATCACAGGAAGTACGAGTGTTCCTATTGTCAGAAACTTTTTTTAACTAAGAAATATCTCAAACGTCACATGGTTAAACACACCGATTGGAATACTTGCAAATGGTGTAAAAATTTGTTTACTTCGAGGCTGGAAATCGAGGCTCACAAGTGTCAAGCTCCGAAACACATTTGTTCTCAATGTGGCAAACGATTCGTTCATCGGGAACACCTCAATCGACATGCCAAATTACACACGAATTCTAAACCAGTAGCAAAGAAAACGACGAAGAAAAGGGCTCTGGAGGAAAAACCAGCGATATGCGAGAAGTGCGGTGATGTTTTTAAAAATCCGCACAGCTTGAAGCAACATTTGCGATCGCACGGAGAAAGAAAATTCGAGTGCGACATTTGCCACAGTAAATTTCACAGAATCGGCGTATTGCAACAACACAAATCCATACACGAGAGTATTCAGGTACCCTGTCAAATTTGTGGAAAAAAACTGAAGAGCAAAAAGGCATTGAGCGTTCACGTTCTATTGCATGGTAACAGAAAATTCCATTGCGAAAAGTGTGACAAAAGTTTCTTTCAAAGATGCAATTATTTGAAACACTATAGACAAATGCACAGTGATAAAGTATTGCACAAATGCCCTCATTGTCCGGCCGAATTTACGAGCGAATTGAGTTTGAATAAACACGTCGAGAGTCACATAAAACCGACTGATTACGCGTGTACCTCTTGCCACAAAGTTTTTCATCGGGAGTATCAATTGAAGCGGCACGTTCAGACAAATCACAGCGGAATAGTGTACCGTTGTCCTTACTGTAAAATGACGGCTCGATACCGTCACAGTATGAGAAGGCATTTTGAGCGTCAACACAAAAGTCTCAGCAACGAATGGAACAAACCAGGTTTTGTGAATGATCTCGTTGAAAAAACTTCGTCTTCTCTGTTGATCGAGCGAGCTATCGCGCCGGTTCGAAGCAGCCAGGTCCTTCAATTGCCGGAAAATAAAAATTCTCACGGTGTGATCATTTCGGTGGAGAACTCGAACGATCCTCAATTCGATGGAAAGGCACAGCAAATTGTAAATAAAGTCCAGGACGAGGTGGAATCGAGTTCATTGAACGGTCGAGAAATTTTGCTTCGAGTACCAGAAATGGACGAGACTGAATCAACGATCCAAAATAACGAATTGACGTCGAGCGAAGTCCCCCAATTGAGTATCAGCGATAACGACGCGAATCTGACGGAATCTGTACTGGGCAACGCTTATATATTCGGCGAGGACGGCGGCGATATAATGTTTTATGTTTTGGACAATACCCCCGTTATCACTGAATATTGA
- Protein Sequence
- MPPLRKLVTIPDAIVSINDTKNNEKTTVESFLTVCSICGQEHATTSCQFLPNLKYVKDEPLRSRARLTLPKNLEITKMADGSMTVIAKCDFQQGTTFGPLEAQRDWTMNPMNDFPIKVFGDGPTNTFHLDRSNEDASNWMCFVSPASSSLEQNLVCYQMESDVYYTAMRFIPSGEELRVWYAPYYALKMKMPLFNTDFANVGEYSAKEDNELNRSDDDTVNHSGNSHENIEEIVQRLPAQQLGARGDKTSWNCTICSVVINSVIEYAKHLMEHYKPLSGVFCEICNKKFYRLSVLQKHKWSKHPEERTNSDVVGIPTSENQQQQNAQTILMNMSDSEGQTSEAMKDILEKFKAGKSLTECNLLPSGIEAEKENPSELSLLDAHSISVNDLLQNNATLIENSSLKSILENQCLNMSLEAITDSMLSDNINGADSVKFNVEELTSEFLDITPEVENINRRIVNFQCDICEKKFGKADYLYRHLRKHTGEFICPNCLGVFARKENLISHLCPSRKFDHRKYECSYCQKLFLTKKYLKRHMVKHTDWNTCKWCKNLFTSRLEIEAHKCQAPKHICSQCGKRFVHREHLNRHAKLHTNSKPVAKKTTKKRALEEKPAICEKCGDVFKNPHSLKQHLRSHGERKFECDICHSKFHRIGVLQQHKSIHESIQVPCQICGKKLKSKKALSVHVLLHGNRKFHCEKCDKSFFQRCNYLKHYRQMHSDKVLHKCPHCPAEFTSELSLNKHVESHIKPTDYACTSCHKVFHREYQLKRHVQTNHSGIVYRCPYCKMTARYRHSMRRHFERQHKSLSNEWNKPGFVNDLVEKTSSSLLIERAIAPVRSSQVLQLPENKNSHGVIISVENSNDPQFDGKAQQIVNKVQDEVESSSLNGREILLRVPEMDETESTIQNNELTSSEVPQLSISDNDANLTESVLGNAYIFGEDGGDIMFYVLDNTPVITEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00262886;
- 90% Identity
- iTF_00262886;
- 80% Identity
- -