Cson009704.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Campoletis sonorensis
Gene Symbol
-
Assembly
GCA_013761285.1
Location
JACEOJ010000081.1:982437-987608[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 6.5e-05 0.0053 17.3 1.4 1 23 130 152 130 152 0.96
2 18 1.3e-05 0.0011 19.5 1.9 1 20 158 177 158 180 0.94
3 18 2.1e-05 0.0018 18.9 0.7 1 23 186 208 186 208 0.98
4 18 5.3e-05 0.0043 17.6 4.4 1 21 214 234 214 236 0.95
5 18 1.6e-05 0.0013 19.2 4.6 1 23 242 264 242 264 0.99
6 18 1.6e-05 0.0013 19.2 5.3 1 23 270 292 270 292 0.97
7 18 6.2e-06 0.00051 20.5 7.1 1 23 298 320 298 320 0.97
8 18 6.1e-08 4.9e-06 26.9 2.7 1 23 326 348 326 348 0.98
9 18 4.5e-05 0.0036 17.8 6.7 1 23 354 376 354 376 0.97
10 18 1.4e-05 0.0011 19.4 5.8 1 23 382 404 382 404 0.98
11 18 3.7e-07 3e-05 24.4 2.9 1 23 410 432 410 432 0.98
12 18 5.5e-06 0.00045 20.7 7.8 1 23 438 460 438 460 0.98
13 18 1.7e-05 0.0014 19.1 9.1 1 23 466 488 466 488 0.98
14 18 2.3e-05 0.0018 18.8 7.5 1 23 494 516 494 516 0.98
15 18 0.00043 0.035 14.8 8.9 1 21 522 542 522 544 0.94
16 18 8.3e-06 0.00068 20.1 0.4 1 23 550 572 550 572 0.98
17 18 0.02 1.6 9.5 4.5 1 23 582 604 582 604 0.98
18 18 3.2e-07 2.6e-05 24.6 1.3 1 23 610 632 610 632 0.97

Sequence Information

Coding Sequence
ATGGCACAATTTCAAGTACCAGACCTTAAACCTGGTGGCCACATGATGGACGTAAGAACGGCGGATGGTTCGGTCGTGAAAATAAGCGCCGGAAACGAGCAAGATCTCGCGAAAACTCTCGGTGTCGAAATGGTCCAGAACATGTACAAGGTCAACGTCGAGGATATTAATCAGCTGCTCGCTTATCACGAAGTCTTTGGGAAACTCCAGAGCGAAATAGCCGCTGGTACGACCCTTGTCGGTGGAACAGTACCCACTCAAACTGTTACTACGATACAGAATGGAACACCGATTGTCCAGCAAGTACAACTCAACAAATTCGACATTAAAACTAGCGATGGCGAGGCTACACCTGGACCAAGCGCTTCACCCGTTTCCGTTGGCAGTCATGCTTGCGAAGTTTGTGGCAAAATATTCCAATTTCGCTATCAACTAATCGTCCATCGCAGATATCATACCGAAAGAAAACCCTTCACGTGTCAGGTTTGTGGCAAAGCATTCTCGAACGCAAACGACCTCACTCGTCACGGTAAATGTCACTTGGGCGGTTCAATGTTCACGTGCGCTGTGTGTTTTCATGTATTCGCGAACGCGCCTTCTCTCGAGCGTCACATGAAACGTCACGCTACCGACAAACCGTACAATTGCACTGTTTGTGGTAAGAGTTTCGCCCGAAAGGAGCACCTCGACAACCACACGCGTTGTCACACCGGTGAAACACCTTACAGGTGTCAATATTGCGCGAAAACTTTCACGCGCAAAGAGCACATGGTTAATCATGTGCGCAAACACACCGGTGAAACTCCTCATCGTTGTGACATTTGCAAGAAGAGCTTCACCCGAAAGGAACACTTTATGAATCACGTTATGTGGCACACTGGCGAAACACCTCATCATTGTCAAGTTTGCGGCAAAAAATATACTCGCAAAGAACATCTCGCCAATCATATGCGATCGCACACTAATGATACGCCTTTCCGCTGTGAAATATGCGGCAAGTCGTTTACGAGGAAGGAGCACTTTACGAATCACATAATGTGGCACACCGGTGAGACGCCGCATCGCTGTGATTTCTGCTCGAAGACGTTCACCCGAAAGGAGCATCTACTGAACCACGTACGCCAGCACACGGGTGAGTCACCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGTGAAACACCCTTCCGCTGTCAATACTGTCCGAAAGCGTTTACGCGGAAGGACCACCTGGTTAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCGTTCACGCGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACATCGATGCCACTTCTGCTCCAAGTCATTCACGCGAAAGGAACACTTGACGAATCACGTAAGAATCCACACTGGGGAATCTCCCCACAGATGTGAATTCTGTCAGAGGACCTTCACCAGGAAGGAACACCTCAATAATCATCTCCGTCAGCATACCGGAGATTCCTCCCACTGTTGTAACGTTTGCAACAAACCATTTACGAGAAAGGAACATCTTGTTAATCACATGAGATGTCACACGGGCGAACGTCCCTTCGTTTGTACCGAATGTGGCAAGAGCTTCCCGCTCAAGGGAAATCTGCTCTTTCACATGCGCTCGCACAACAAGGGCAGCAACGCCGAAAGACCGTTCAGATGTGATCTTTGCCCGAAGGACTTCATGTGCAAGGGTCACCTCGTTTCGCACAGGCGTTCGCATTCGGACGAGAGACCGCACAGTTGTCCGGATTGCGGCAAAACTTTCGTCGAGAAGGGCAACATGTTGCGACACTTGAGAAAACACGCCGCCGAGGGAGCTCCCACACAAGTTACAACCGCCTCCGCTATCTCGCAACCAGGAGTACTGCCGATACCAGCGGCTGCTGTACTCGTCGGACATCCTCTCGCGCCCCCAGCACCGCCCGTTGTACCACAGCACACGGTCGTCGTCCCGACACCACCGGGAGTTCTGACCTCTTACTGA
Protein Sequence
MAQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGGTVPTQTVTTIQNGTPIVQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCNKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGAPTQVTTASAISQPGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01090131;
90% Identity
-
80% Identity
-