Cson006578.1
Basic Information
- Insect
- Campoletis sonorensis
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_013761285.1
- Location
- JACEOJ010000079.1:4966204-4969657[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.3e-117 1.3e-112 376.2 31.1 1 300 29 325 29 325 0.97 2 3 0.0038 79 2.6 2.5 122 171 325 374 323 377 0.91 3 3 0.027 5.5e+02 -0.2 4.9 194 237 356 398 337 402 0.57
Sequence Information
- Coding Sequence
- ATGGAGTCGACTATAGCGGGACGAAGACGTAATGCTACGAGGCATTCTGCCGAGGATCAAGCACTCGACCAGATAGCCAAAGAGGCAGAAGCAAGACTGGCTGCAAGGAGACAAGCCCGTGCTGAAGCTCGGGAAATTCGGATGCGAGAATTGGAAAGACAACAAAAAGAGGTGGAAGAGAATGCGGATAGAGTTTACGATATGTGCTCGGCAGAAGGCAGCAGAACAATGCGAGTAACGCCTGATCCAGTGCGGACGTCACGCATACTCGCAAATTCGAACAACTTTCAGTCAAGTAGGAGGTCATCGGAAGATTCGTTGGAAGATACAGGATTAAGCAGAGATCTAAGATTAGAGCTCAAAGAATTCGAGGAAAAGTTTAGAAAAGCAATGATCGCGAACGCTCAGTTGGACAACGAAAAATCATCATATGCATATCAAGTTGATTTATTAAAAGACAAACTTGAAGAGTTGGACGAAACAACAGCACAATTGAGACGCGAGCTTAGGGAAAAAACCAGAGAAGCTGAACAGCTGAAACGTGCCAGTTATCGATTAAAGGACGATTTCGAAGTATGCAAAGCTCAATTGTTGGAAAGAGACACTCTTATTCAGGAAAATGGACTCGTCATAGTTGACGATGAGGGTAGTGGAGACGGAGAGCATAAAATGGTGAACGGATACAGGAAAAGAGTACTAGTCAGCACAGAGGCTGCCGAGTTATTAGAAAATGCTGGTGAAGGCTCGTTAGATGTTCGATTGAGAAAGTTTGCTTCCGAAAAGAAGGAATTACAAGATGAAATTGGCCATTTGAGGTTGGAACTGGAAGAAGCGAAGAGTCGTCTGAGATCGGAAAAATCCTCAGGTTCAGTATTAGGTGGATTGTCTGATTCTGAGGACGTTCAGAGAGAAGCGAACAAATTGTTGGCAGATTATAAATTTAAATTGCAAAAAGCTGAACAAGATATGTCCACGTTGCAGGCAACTGTCGCGAGGCTAGAGAGCCAAGTTATACGTTATAAATCAGCGGCTGAGGCATCGGAAAAAGCGGAAGACGAATTGAAAGTCGAGAAGAGGAAATTGCAAAGAGAGGTTCGTGAATCGCAGGGTCGTGTTGAGGAGCTCGAAACAGCGAATTCTCATTTACAAAGACGACTGGACAAACTAAAAAATGCTAAATCCGCACTTCTCAAAGATGCGTCTCAAAGATAA
- Protein Sequence
- MESTIAGRRRNATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEVEENADRVYDMCSAEGSRTMRVTPDPVRTSRILANSNNFQSSRRSSEDSLEDTGLSRDLRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELDETTAQLRRELREKTREAEQLKRASYRLKDDFEVCKAQLLERDTLIQENGLVIVDDEGSGDGEHKMVNGYRKRVLVSTEAAELLENAGEGSLDVRLRKFASEKKELQDEIGHLRLELEEAKSRLRSEKSSGSVLGGLSDSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKDASQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01102050;
- 80% Identity
- -