Cson003949.1
Basic Information
- Insect
- Campoletis sonorensis
- Gene Symbol
- klhl36
- Assembly
- GCA_013761285.1
- Location
- JACEOJ010000114.1:278225-280725[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-05 0.01 15.7 0.0 2 38 205 241 204 247 0.85 2 4 7.6e-10 7.1e-07 29.0 0.0 5 38 258 290 255 294 0.93 3 4 0.0047 4.4 7.3 0.0 7 34 312 338 308 344 0.84 4 4 2.4e-12 2.3e-09 37.0 0.1 2 39 367 404 366 408 0.94
Sequence Information
- Coding Sequence
- ATGTCAACAACAACAATAATAGAGAGCTCAGAAGAGCCTCTGAACCAGGAGAGTTGTCATTACAAATGGAACGATCATCAAAATCATTTGTCGGACGTCGTTCGACAGCTTTTAGAAGAAGAATGCATGGTCGACGTGACTCTTGTTGCCGATGGCGAACGCATACAAGCTCATCGTATTGTACTTTGCTCCTGCAGTACTTTATTTCAAGAAATATTCAGTCAAGCGAATGAAGAACACGCAACAATAATATTAAGTGACATATCAGCCCAAGATGTAAGATCAATTGTGGAATTTAGTTATCACGGCGAAGTGAGAATTCCTGTTGAGAATATTAGCAATTTATTGGAGGCAGCTCATTCATTGAGAATTTGCGGTCTAATGGAGATCGACGGTTTGGATGAAAACGATGCGATAATAAGTGTGAAAGATTCAAAGGACGAGACGGAGTGTTTGGAAGATTTGGAGGATTGTGTAGAAAATGATACGGAAATGTTGGAGGAAGATACGCTTCGGTACGAGGATGTGAGGCAAAGCTGTGAGCGTGTGGAAAAAGAAATATCGAATAAAGGAAAAAAGCGCCAGAAAAGTAATTTGAAACGCGAGTACAACGATGAGATGCTTGCCGCAGCGATAGATGATCTCAAATCTGGCCAAACCCTCGTCGAGGCTTCCATCAAAAATAACATACCACGCTCGACCCTTTACATGAGGGCAAAAGCACTGGGCATACAATTGAATGCTTCTCGGAACGAATATCCAGCCGAATGCATGAAAGCTGCGATCGACGCAGTCATCCAAGGCTCCAGCTTGCAACACGCTTCCGACAAATTTTTTATACCCAAAACCGTCCTCTGGCGACGCATACAAAAAGAAGGATGTCAAATTCTACGCACCGAAGTCAAACGCTCCTACGGTCAGGAAAAAAGAGAGGCTGCAGTCAAGGCTCTTCAACGAGGAGAAAATTTAACTAAAGTTGCTCAACAATTTCAGATCCCAAAAACAACGTTGTTCCGTGAAAAAGTGAAACTCGTTGACGAAGGTAAATTGCCAGAATCTTTTTGGAAGAAGAGAAAGACTGGAAATGAAGAATGGAAGAGAACGCGTTTGGAGGAAGCAGTTGCAGTTTGCAAAGAGGGTAAAATGTCGCAAGCTGCAGCGGCGATGAAATACAGAATTCCCAAAACAACGATTTGGCGACGACTGCAACAGGAGGGAAAAAATAATGCACGAGAAAATGCGAAAGCTGCGGAACGCTCGTTGAACGAGTACGAAATTTCCGATAAAAACGAACAGGAGAGCTCTGAATTCGCTCTTTGCGAGGTATCTTCAGAAATTCCAATGACCTACATAGACTCGAATTTACCCCCGGATTCGGTTATAATATTGACAACGGAAGACGTCGATGGTTTGAATCTTGACGGAAATCGACAATTGATCGTTAATCAGGATTCCGGACAGGAATACGTTCGATGTGCTTTGGACATAACCGACGACACAGAAGCCTCGGAATACCAGCAAGCGGACAGCTAA
- Protein Sequence
- MSTTTIIESSEEPLNQESCHYKWNDHQNHLSDVVRQLLEEECMVDVTLVADGERIQAHRIVLCSCSTLFQEIFSQANEEHATIILSDISAQDVRSIVEFSYHGEVRIPVENISNLLEAAHSLRICGLMEIDGLDENDAIISVKDSKDETECLEDLEDCVENDTEMLEEDTLRYEDVRQSCERVEKEISNKGKKRQKSNLKREYNDEMLAAAIDDLKSGQTLVEASIKNNIPRSTLYMRAKALGIQLNASRNEYPAECMKAAIDAVIQGSSLQHASDKFFIPKTVLWRRIQKEGCQILRTEVKRSYGQEKREAAVKALQRGENLTKVAQQFQIPKTTLFREKVKLVDEGKLPESFWKKRKTGNEEWKRTRLEEAVAVCKEGKMSQAAAAMKYRIPKTTIWRRLQQEGKNNARENAKAAERSLNEYEISDKNEQESSEFALCEVSSEIPMTYIDSNLPPDSVIILTTEDVDGLNLDGNRQLIVNQDSGQEYVRCALDITDDTEASEYQQADS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00262572;
- 90% Identity
- iTF_01299406;
- 80% Identity
- iTF_00263631;