Basic Information

Gene Symbol
-
Assembly
GCA_948107755.1
Location
OX403631.1:5507403-5517270[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 6.7e-06 0.00057 20.1 1.0 1 23 238 260 238 260 0.98
2 31 0.0029 0.25 11.8 1.9 1 23 283 306 283 306 0.96
3 31 0.00022 0.018 15.4 0.5 2 23 313 335 312 335 0.96
4 31 0.00011 0.0095 16.3 0.6 1 21 355 375 355 376 0.96
5 31 0.002 0.17 12.3 0.2 2 23 492 513 491 513 0.96
6 31 0.11 9.4 6.9 0.2 1 23 519 542 519 542 0.92
7 31 0.00013 0.011 16.1 0.1 1 23 607 630 607 630 0.96
8 31 0.0086 0.74 10.3 0.4 1 23 636 659 636 659 0.96
9 31 0.13 11 6.6 1.5 1 23 672 694 672 694 0.97
10 31 3.8e-05 0.0033 17.7 0.9 3 23 739 760 738 760 0.96
11 31 0.037 3.2 8.3 0.7 2 23 828 851 827 851 0.93
12 31 6 5.1e+02 1.4 0.0 2 23 860 882 860 882 0.83
13 31 1.8 1.6e+02 3.0 0.3 2 23 889 911 888 911 0.92
14 31 1.4e-05 0.0012 19.1 1.2 1 23 919 941 919 941 0.98
15 31 0.5 43 4.8 3.1 2 23 985 1008 984 1008 0.92
16 31 0.00023 0.019 15.3 3.3 1 23 1011 1034 1011 1034 0.97
17 31 0.015 1.3 9.5 0.7 2 23 1041 1063 1040 1063 0.95
18 31 0.0025 0.21 12.0 6.0 1 21 1127 1147 1127 1148 0.95
19 31 0.0029 0.25 11.8 1.8 2 23 1162 1183 1161 1184 0.93
20 31 0.23 19 5.9 0.6 1 23 1187 1210 1187 1210 0.95
21 31 0.0089 0.76 10.3 0.9 2 23 1217 1240 1216 1240 0.93
22 31 3.3 2.8e+02 2.2 0.2 2 23 1248 1270 1248 1270 0.94
23 31 3.9 3.3e+02 2.0 0.0 2 23 1277 1299 1276 1299 0.87
24 31 0.12 11 6.7 3.0 2 23 1308 1330 1308 1330 0.96
25 31 2.4 2.1e+02 2.6 1.7 2 23 1336 1358 1336 1358 0.92
26 31 0.057 4.9 7.7 0.4 1 23 1431 1454 1431 1454 0.95
27 31 0.0056 0.48 10.9 2.8 1 21 1495 1515 1495 1516 0.94
28 31 0.49 42 4.8 1.4 2 23 1640 1662 1639 1662 0.94
29 31 0.017 1.4 9.4 1.5 2 23 1669 1691 1668 1691 0.97
30 31 0.74 64 4.2 2.5 1 23 1702 1724 1702 1724 0.97
31 31 0.046 4 8.0 0.1 3 19 1736 1752 1736 1753 0.97

Sequence Information

Coding Sequence
ATGGAGCCTTCCAAGGAACGCTACAACGAGCTCTGCAGGCTCTGCGCCTCTTACGACGCCGTCAAAATGGATATATTCGGTAACGAGGGGAAAAATCGTCAGCTCGTCGACAAAATACAAACTTGCCTGCCCTTCAAAATTGCCGAAGATGATCGGTTACCCAAGTGTCTGTGTTATCGGTGTATGTACAATTTGGAAAATTTTTACGACTTCAGAACGGCCTGTGTTAATGCTGTTGCCCTTTTGGAACGATGTCTACCACCCGGAAGCAATGCTACTGGTAAGCAAATCGAAAATGGAGGTGAGAGCTATTCGGAATTGCGCTCGGAACTCCTCAAAGAAAAAGAAAAAATGCCTATACTCATACCCGAAGCCCCCATAGTAAATCCAAACGCAGCCCTTGGAACGCCGCCGAGATTAAATTCGGACGGCGAGGGCGATCACGAGGTTGAAGAAATTCACAACGTCAGCGGAACCGAAGAGGGTGTCGCAAAAGAATCAGTATTCGCAACGAACGCGAGCTTCGATGATGCGGACGATCGTAAATCCGACGAGTACGAGATGGACATGGAAACGAATCCGAGTGATTTTTTGGAAATGACACCCATGGTAACCGAGGAGTTGGATGAAACAAGTACAAAAAAGACACCAGCGTCGAAAACGAGAAACATGATGGAAACATTTCAACACACGTCCGAGCAACACGAGGTATACGTTTGCTCGTTGTGTAACAAGGCTTTCAGTTCGAAGGGTCACTTATCCCTCCACGCGAGAATTCACGTTGGCGCGGGTGACGTTATCGGTGCCAAAGTTGTTACTGACGATCACACCTCGTACAAGAGACCCTATCAGTGTGATCTTTGCAACAAATCTTATTCAACGGCGAAACATCGATGGGGACACGTATCAACGACTCATCGAGGTCATCCGGCGGTAACGTGTGCCTATTGTTCGCGAATATATTCAACTCGTACGAATCTTGAAGAGCACATAAAATCACGACACACCGGTCTACCTCCGCCTCCTGAATTACCAGTTGCCTATGTACAGCCGGATAATCGATACCGATGTAAAACGTGTCCAAAAATGTACACGAATGTAACGGATTTGAACAAGCATACGAGAGTATGCGCGGCTGATGTTGCAACGAAAGAGAAACAGCAACAACGACCGATTAAAAAAATACCTCGAAAAAACAAATCTCGCGTTGATACGTCCGATATTTCGAGCAGTAGCAGTACAACTGACACCGAGGACGAGAGCAACAACGATTATAGAAACGCAGAAGCTAAATTGTCAAAAAATCCTCAATTAACTATATTGAAACAGGCTCTGACCAAAGGTGGCGAAAATCTCAAGAGAGATTATGAGGATAGAAGGAATCAAGTGAACGCTGGTAGCGGAAATAACAAACCTCCTGCTGCCAAAGTTGCCCGAATTGAAAATAACGAGGGTTCGGCTCGGAAAAGATGGTACTGCGAGATGTGTCCGCAAAATTTCACTTCCGTCGACAAATTGAAACAACACGAAATGATTCACGACGCGGAAAGACCTTACGTTTGTATACTGTGCGAGAAGGATTTCGTCCTGAAGACATCGTTGAGTAGACACATCGTATCGAGCCACGGAGTCGATCCGACTCCCATTCTCGAGAGCGACAAGTGTACGAAGAAAGGCGCGTTGGCACAATCATGGAGAAAAAAATTGATTAAAACAGAGGACGTAAGAAGTGGTGGACGCAAGAGAGAAGCACCGAGCGATTCGTCGGAGGATGCCGATAGCTTTGCTCATGGTAATATGGTTGAAATCGAGACTGTATTTGTCTGTGAAATATGCACACGAGACTTCAATGATCGCGCATCTCTGTGGCTTCACATTCGTGCCACCCACAAAGAATTTGCAGCGTTTGCTTGCGGAGTTTGTCTGAAAATATGTTCCGACAATGCTCAGCTCTTGAATCACGTAAATATGTATCACGGTGGCTCGAAACTCTTGGTATCGGAGCAAAGGCGATATAGTTGTACGATATGCGGTAGGCAACACGATTCTCGAAAAAAATTAATCACTCACGTATCGATACACAACGTCGATCCGGGCTACGATCCAGCGAGTTTCGTTCAACTAAATGCAAACTATTACAACGAAAGTTTCAATAGCAACGAGGTCAATGATCACTTGATGGACTTTGATCCGGAGGACGGCGACAAAGTCGACTGTTATATTTGTTACAAGTCTTTTCCAAACGAAGATCATCTCATTCGACATCAACGAAACGCTCACAAGTCCGAAGGTGTCGTGCCCAGCAGCCAAGTGACGATACCGAATAGTAACGGGCCTGCCGCTGTAGCTGTACCAGGGCTCAACGGAACCAAGGCGCAGTACCATTTATTCTTTGTTTGTGAATTGTGCGGTAGCTCGCACCCAAGCAAGTGGGAACGTTGGCTCCACGTCAGTGGGAATCACAGTGAAGATCCATCGATGAGATGCGAACGAGAGGATTGTGGCAAGATCTTTGCGACGAAGGCACTTCGAAACGAGCACGCTCAGCATCATCTGATTCAAGGATCATCACCGAACACGTGCGAAGTATGTGGCAAACTGTGGGGAAGTCGGGTCGATTACTGGAAGCACGTAATGGGAGTACACTCGGATACGGTGCCGTTGATTTGTGGCGTTTGCCTCAAAGTATTTCCCGACGTTGCCAAGCTCAGTTGTCACGTTAAAACGAATCACTGGCCGCTAACGAACGGTGACTTCAGTTGCGACATTTGTGGCAGACCCTATTCTAACAAATCTAAAATGTCGAGGCATCGAAAGATTCACGGGGTGGTGGAGGTCGACCCAGCGTTAGGGAACAGCGTCGATGCGAGCGGCAGAGCTCCGGCTGCTGGGGACGTTCGCAACGAGACGGGCGCTTATTATGGAGAAAAGAGTCCGAAGGAAGTTCAACTGACGTGCGAATTGTGCACGGATTTGAGGTTCGAAAATTGGCAATCGTTGTGCCATCATCGGAGAATGATTCATGGCCTCTTTCCTTGCGATCTGTGCAACAAATGTTACGGACGAACGTCTCATCTGTGGAAACACGTTAACCGAGTCCACAAGGGACACGAGGACGTGACATGTCGATACTGCATGAAAACGAGCGCCTCCAAGGACCATCTAATGGCGCATATTGCAAAAATTCACCGTTATGAACCGGAGAACAAGCTCGAAATGATGATGGTAGTGGGAGAAGCTGCGGCCACGGTTACGGGAGAGGAGGAAGACGGAGAGGAGGAACACGAGCCGAGAAGGAGAAGAAGAAGAAGGGGAGGCGATGCGGCGAGTCTCGGAGCGATCGGCGAGGATGAGGAGGCTGGTGTTGGCGCCGGTGTCCATCATTGTGACAAATGTCAAAAGAGTTTCCACAAACGTTACTTGTTGCGACGTCATATGAAAGGTTGTCAAAATTATCGAAAAGATCCGGGCGCGTTGCTAACCCGCTGTCGAGCTTGCGAGAGAATTTTCAAAGATCGTGCCAGTCTGCAGAAACACATTGAGAATCATCATAGCGAGTACACGTGTCACTTGTGCAACGAAGCGGTTACCTCGAAACTCGGTATAATGACTCACAATCGCGTTAATCATCTTCATCATCCCGATCTCACTTGTGAGAATGGAAATTGTCGAAAATTATTCCGCACCAAGGAGGATCTCGAGTCTCATCGAAAGGATCACAAGTATCACAACACGCCAAACGTTTGCGATTTTTGTGGCGACACCGTTGAAAATAAGCTCAAATTGAAGATGCACGTGTTGTCTCTTCATCGGAACGAGATTGGTGTCTCGTGCGGCGTATGTCTCATTCCTATGAAAGATCCAAAAGATCTGAAAAAACATGTAGAGGACGAGCACGAGGGTGTCCTTCACAAACCAAACACGTGCCAAGTTTGTGGCAAACGATACGCCTCCAAGTGGAAAGCTTTTGACCACACGAAAAAATGTCACGGCAAAGTATTCCGTACGTGCAAACAATGCCTCGCGGTATTTACCACCGACGCGGATATACGTCATCATTACGAACACGTGCACAACGTACCGAAGGATCAATTGGCTGGTTTTGAAAATCGTCTTCTCGATTCCCGAACCGAAGATTGTGATACGATCGTCAAAGACGAGCCCGAGGATTACGATTACGAGATGCAGCGAGAAACTAAATCTACGGTTGCTCTTCGTGACGAAAATGACGCGTACAATTTCAAACGCCGGAGAGGCAGTAGCGGCCTTGGCAACAATCATCGTCACACCCACGACTGTGAAATTTGTCCCGAGATATTTCTTAATCGGGAAACGCTCTCGGACCATTACAGAAACGTTCATAATACCGATCCGGAGAGAATGTTCAAGAGGATAAAACTGGAAAGAGGTGAAGGAGGAAGATTTACTAGCACGAACGCGACAGGTTCCTCCAAAAGAATGATGATGCGAGAACGCGAAAATTTCGAGTGTCAAAATTGTTCCAGACAATTTTGTACGAAAAGCCTATTTTGGAATCACACGAACGTTTGTACGAGGCGTAATTCGGCGAACCGGGAAGATCCGAGATCATCTTCGTCATTCGGTCAAACCTCCTCGATTCTTGAGGCTCATCTTAAAAATAATAACAGAATCAAGAGAGAACCGAGCGAAATTCCGGGACTCGATGAGACCAATTTAAATATACCTGACTTTAATCTTTTCGAGGATATAAATATGCAGCTCTCGGAGCAAAAACCTATTCCGAATTTGATGCCACTGTCAGAATTGAGACGGGCGGGAGGCGGTGCCGGCAGTGGCGGTCTTCTCCTTTTACCCTCCTCGAACGAAAAGTCTTTGAGAAAAGACTCGAGAAAGGATTCGAGGAAGGTTTACGACGAATCGACCAACACCGTTTGTATTTGTGAGGTATGTGGTAAACAGTGGCCCGCTAAAAAACATCTTTGGCAACATTTGATACGTTTCCATCGAGCCGAGGCTGCTGTTACGTGCGGAGTTTGTCTCAAGCTGTGCACTAATTACGAACAGTTGAGAGAGCATCTGAGGACGACCCACGAGTCCGTATTGTCCCGAGAGGGTAATAATTTTACTTGCAAAACGTGCGGACGTTATCACAACGCGAGAAGCAAACTTTTGTTACACATGAGCATACACATAAACAATGACAACGGTGGTGGGACTTGTTGGTGTCCAAAGTGTGAGAGGACCTTCGAGAGTGAAGAAAAACTCAACGAGCACGCTCCAATTTGTGACAAGAGCCGTCCCATTTTCGAAGAACACAGCGCCGACGTCGACACCGATCGTGAGACGAAGATCGAGGACGATAAAGGAAGTTTGATCGGTGACGGTGCTTCGCTCACGGGCGAGGACGAGGAGGAGGTTGATTTCTCGGATCGACGTGTACGAAGTAACTCTGAAAATACGGAAAATTCAGAGAGCAGCCACGCCGGTGCCCGTTCGAATAGTGAAAGTGAGAGCAGCGAGGAGGAGGAAGAAGAAGACACCGAATCTCGCACAAATAGTCGAGCGACTGGTCCAGCTACTTGTCATTCGGACAGCGAGGAAGAAAACGATTCTAGTGAAAAAAGTCCTAATGACATTCCTTCCACTGACGGACTCAAAGATGACAAAGACAGCAGTGATAATGGCTCGAACGTCATGAAAAACGAAACTAACAAATTGGCTACGAAAATTCCTGAGACGAAGCAAGAAGACAAACACGAGGAGGAAAATAAAAATGTGGATCAACCGATAGAACCGCCACCGTCACAAGTCGATCAAGAAACGGAGAAAATTCCGTCCAAATCAACGAAAGATTTAGATAAAAATAGTACATTATCGATACAAGAGCCTCCTGTAGCACAACAAAACAATGAAAAAATTCATGAAGATGACGACGACGATGACGGACCGCCTATTTTGAGTCCGATGATGCCACTGTCGTCGGATAACGCGATCGAAGAGCGGGACGATGTTGCGAGCCATCGGCTCAGTCCGATGCTCTTGTTAAACGATCACGAAAAAATGAATCCTCGTCCAATTTCTCCTGAAATTAAAGAAACTGACAAAAAATCCAATATAAAGGCTCCATCGTGTTCACCGAACAACGAACGATTTTACGATGATGAGGATTGCGGTGAACGTTCGAACGAGGAGTTGGCCTCGGACGAGGAACTCGAGGAAGAAACGCTCGAGGACGAGAACGAGGAGCTGGACGACGAGGACAGTAGAATTCACGTTGTCAATCCTGACGACGAGTATCATTCGGACGATGATCGACCACCTGATGAAGACAACGACCAAGAGGAGGATGATGTGGGGGAGGAGGAGGAGGATGACGAGGAGGAAGAAGATCAGGATCAGGAGGAACCGGAACAAGAAAACGACGTGGCAGAGGAGGAAGAAGTAGAGATGGAGGCAGAGGACGAGGACGAGGAGGAAGAAAGAGGAACAGAGGAAAATTTAGAAATGGATCAGGAAGAGGAAACTATCGAGGAGATGGAAGAGGGTGTTGAAATAATAGGGGAGGACAACGAAGTCGACGAGGAAGAAGAGGAGATAGAAGATGAGGAACTAACTGCTGAGAATTCTTTGCAAATACACAATTTGGACGGAACTGTATTGATGGTTGCCAATGATGCGGACGGTAATCAAATATTGATTCAACGAAATGTCTCGGACATGGAAAATGACGAATCGATCGGAGCCCTTACCGGTTATATATACGAGGACGATGAGGAGTACGACTTTGCGGGATTTCAAGTTGAAGAGGGTGGAATCCACGTGGAAGAAGCGAGACCGAGTAACGGTGACGATAGCGATGAGGAAGAGGAGGAAGTAGAAGAGGATGTTGTCCTCGAGCAGGATGACGACGAGAGGGAAATCACGGAGGCTGAGGACGAAAAAGAGACGCGACATGATTCCGCAGACGAATCAAATCACGAAGAGATGGAAATGACGACGAGCGAAAAAAACGACAACGATGACGATAACGACGGAGTGGGACAGGATTCGAGTGCCACATAG
Protein Sequence
MEPSKERYNELCRLCASYDAVKMDIFGNEGKNRQLVDKIQTCLPFKIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPPGSNATGKQIENGGESYSELRSELLKEKEKMPILIPEAPIVNPNAALGTPPRLNSDGEGDHEVEEIHNVSGTEEGVAKESVFATNASFDDADDRKSDEYEMDMETNPSDFLEMTPMVTEELDETSTKKTPASKTRNMMETFQHTSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGAKVVTDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRTNLEEHIKSRHTGLPPPPELPVAYVQPDNRYRCKTCPKMYTNVTDLNKHTRVCAADVATKEKQQQRPIKKIPRKNKSRVDTSDISSSSSTTDTEDESNNDYRNAEAKLSKNPQLTILKQALTKGGENLKRDYEDRRNQVNAGSGNNKPPAAKVARIENNEGSARKRWYCEMCPQNFTSVDKLKQHEMIHDAERPYVCILCEKDFVLKTSLSRHIVSSHGVDPTPILESDKCTKKGALAQSWRKKLIKTEDVRSGGRKREAPSDSSEDADSFAHGNMVEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNAQLLNHVNMYHGGSKLLVSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPGYDPASFVQLNANYYNESFNSNEVNDHLMDFDPEDGDKVDCYICYKSFPNEDHLIRHQRNAHKSEGVVPSSQVTIPNSNGPAAVAVPGLNGTKAQYHLFFVCELCGSSHPSKWERWLHVSGNHSEDPSMRCEREDCGKIFATKALRNEHAQHHLIQGSSPNTCEVCGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVAKLSCHVKTNHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGVVEVDPALGNSVDASGRAPAAGDVRNETGAYYGEKSPKEVQLTCELCTDLRFENWQSLCHHRRMIHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCMKTSASKDHLMAHIAKIHRYEPENKLEMMMVVGEAAATVTGEEEDGEEEHEPRRRRRRRGGDAASLGAIGEDEEAGVGAGVHHCDKCQKSFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSEYTCHLCNEAVTSKLGIMTHNRVNHLHHPDLTCENGNCRKLFRTKEDLESHRKDHKYHNTPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDEHEGVLHKPNTCQVCGKRYASKWKAFDHTKKCHGKVFRTCKQCLAVFTTDADIRHHYEHVHNVPKDQLAGFENRLLDSRTEDCDTIVKDEPEDYDYEMQRETKSTVALRDENDAYNFKRRRGSSGLGNNHRHTHDCEICPEIFLNRETLSDHYRNVHNTDPERMFKRIKLERGEGGRFTSTNATGSSKRMMMRERENFECQNCSRQFCTKSLFWNHTNVCTRRNSANREDPRSSSSFGQTSSILEAHLKNNNRIKREPSEIPGLDETNLNIPDFNLFEDINMQLSEQKPIPNLMPLSELRRAGGGAGSGGLLLLPSSNEKSLRKDSRKDSRKVYDESTNTVCICEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCTNYEQLREHLRTTHESVLSREGNNFTCKTCGRYHNARSKLLLHMSIHINNDNGGGTCWCPKCERTFESEEKLNEHAPICDKSRPIFEEHSADVDTDRETKIEDDKGSLIGDGASLTGEDEEEVDFSDRRVRSNSENTENSESSHAGARSNSESESSEEEEEEDTESRTNSRATGPATCHSDSEEENDSSEKSPNDIPSTDGLKDDKDSSDNGSNVMKNETNKLATKIPETKQEDKHEEENKNVDQPIEPPPSQVDQETEKIPSKSTKDLDKNSTLSIQEPPVAQQNNEKIHEDDDDDDGPPILSPMMPLSSDNAIEERDDVASHRLSPMLLLNDHEKMNPRPISPEIKETDKKSNIKAPSCSPNNERFYDDEDCGERSNEELASDEELEEETLEDENEELDDEDSRIHVVNPDDEYHSDDDRPPDEDNDQEEDDVGEEEEDDEEEEDQDQEEPEQENDVAEEEEVEMEAEDEDEEEERGTEENLEMDQEEETIEEMEEGVEIIGEDNEVDEEEEEIEDEELTAENSLQIHNLDGTVLMVANDADGNQILIQRNVSDMENDESIGALTGYIYEDDEEYDFAGFQVEEGGIHVEEARPSNGDDSDEEEEEVEEDVVLEQDDDEREITEAEDEKETRHDSADESNHEEMEMTTSEKNDNDDDNDGVGQDSSAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00439674;
90% Identity
iTF_00263705;
80% Identity
-