Crap001676.1
Basic Information
- Insect
- Campoletis raptor
- Gene Symbol
- Hr39
- Assembly
- GCA_948107755.1
- Location
- OX403627.1:8199314-8205662[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.066 5.6e+02 -0.4 6.3 46 163 206 322 171 338 0.66 2 4 2 1.7e+04 -9.2 16.9 60 160 345 443 321 468 0.61 3 4 3.7e-08 0.00031 20.2 0.0 1 21 538 558 538 563 0.92 4 4 1.1e-71 8.9e-68 229.5 0.0 97 408 599 920 568 920 0.78
Sequence Information
- Coding Sequence
- ATGTCGGAACAAAACGGGCCCACGGAGGGCCCGGGCTGGTGGCCACCCTCGCAGTCTTGGAAATCATCAAGCAACGCGTCATCGTCGTCATCGGCATCGATTCAATCCTCGCGCACACTCGAGGCTGGAAAAAATGTTTCTGTCACGACGATCAATGTACCACCGGCCCAAGAAATGCACGAAGGTAAAAGCGTATGCAAATATCTGGGAGGGCAAAATGGCGTGACGGTATCGGTGGTCTCGAATTGCGGAAGTGGTCCCGGCAGCGGTATGGGTACCGGACCTGGAGGAGGAGGTGGAGGTGGATCTTCCTCGTGTGCAGAATCAAATTGCCTCGAGGATCTGGAGGACAGCGACGGTGAAGTTAGTAAAATCGATTTTCGGGGCGTTAATCTACGAACGAAGAAGAAACGAGATGCCTCCGGAGGATCGGAGAACGAATGCGGTGCCGTAGGCGCCGACAATCTCGAGCAACAACAGCCTGAGAGACCAATGTCATGGGAAGGCGAATTATCCGATCAAGAAATGTCTTCCCATACCATAACTAATCAGGATCACGAGGAAACGTCGATGGAAGGAGTCCAAGTATGTGGAGCAAGTCCAGGGCCACAGGAACAAAAATTTCCAATAAAGCCAGAGCCTGATTTTCGTTCGAGTCCAAATTTGTTGATAGGCTCTCACAACGACGGAAGTTTAGGATTGTCGCATGTTCAGCAAATGCAGCAACAGCAACAACAGCGAAGTATAGATGGTTTGGAATCAACGCAACAAAGCGATCTTCCGTTGTTGGTTGGAAAACTTTTGGGTGGTTATAGCAGTTCGACACCGAATCACAGTCCGATATTAAATCCACGTCATCATTTAACGAAACACAGTCATACGAGGTCACAGGTGCCTTCACCAGATTCGGCGATTCATTCAGCGTACAGTGTGTTCAGTTCACCGACGCAGAGTCCCCACGCGGCTCGTCATTCGGCTCTCGGTGCTGGGAGTCCGGTTCCATCGTCTTCATTGTCACGTCATAGTTTCAACAATTCAACGTCTTCGTTATCGCTCTCGTTGTCGCATTCATTGTCCCGCAACAATTCGGACGCTTCGAGCAGTTGTTACAGTTATGGTTCGCTCAGTCCACCCACGCATTCgccaattcaacagccaagacattcgcacgcgcaacatcatcatcaccatcatcaccaacaacagcagcatcaacaacaacaattatcacaagctggtagtccgttgcatttagcttcatcaacgTCCACGAATCCACACAATTATGGGCATCAAAGCTCAGAAATATCTTCGGAAAGTGGTCATCCCGAGGATCAAGAAGATTGTAAAATTCCTACTGCCACTTCGGGTATCTCGACGAGGCAGCAATTGATCAACAGTCCGTGTCCGATTTGTGGTGATAAAATAAGTGGCTTTCATTACGGTATATTTTCGTGTGAATCTTGCAAAGGTTTCTTTAAACGAACCGTGCAAAATCGCAAAAATTACGTTTGTCTTCGAGGCGCTGGCTGCCCTGTTACTGTTGCAACCAGAAAAAAATGTCCTGCCTGTCGTTTTGACAAATGTCTTAATATGGGCATGAAATTGGAAGCCATCAGAGAAGATAGAACGCGAGGAGGTAGAAGCACTTATCAATGCACTTACACACTTCCGGCTAATTTGATTGGAAGCTCCGGTGGTGGTATGTCCAATGACAAAATGACTGGTGGCAATTGCAGCCCAGCTCCACCTGGCTCCGAACATCATCATTCAGCGAGACATCATTGGAACCATTCTCACAAAATCCAAGTTGTGCCACAATTGTTGCAGGATATCATGGACGTTGAACATTTATGGCACTACAATGACAACGATCGCGTCACCGGTGGCAGTCAAAGTTCTAACGTTTCCGGTGGTGGCAATGGCTCACCCATGCCCAATGATATGCCTGGACTTGGCGTAAGTGGACTCGTTTCCGGTGCTGGCACCGGAAGTCTCAACACCTCAAGTAACAATGGCAATGTTGACAATCGTTGCGATACAAATAGATCCAACAATTCACCGTCCAGTCTCAACAATGAACAACATCAACAAAATTCTACTTCCAATAATCCAACCAATGGCAGCAACGAGCCAACCACTAATCCCAATGGCAATACCACACAAAATCCTGATTTTCTATCGAATCTCTGCAACATAGCCGATCATCGACTATACAAAATTGTTAAATGGTGCAAAAGTTTGCCTCTCTTTAAAAATATTTCTATAGACGATCAGATTTGCCTGCTGATTAATTCGTGGTGCGAATTGCTTTTGTTCTCGTGCTGCTTTCGCAGCATGAGCACTCCTGGCGAAATTAGAGTCTCACTTGGCAAATCAATCACTCTCGAACAAGCTAGACAATTGGGACTTGCTACGTGTATCGAAAGGATGCTCGCTTTTACCAATAATTTGAGGAGGCTCAGGGTCGATCAGTACGAATACGTGGCCATGAAGGTTATTGTTCTACTGACATCGGACACGAGCGAGCTTAAGGAACCCGAAAAAGTGAGAGCTTCTCAGGAAAAAGCATTGCAAGCTCTCCAGCAATATACAATTGCGAGGTATCCAGAAATGCCTGCGAAATTCGGTGAGCTATTGCTCCGAATACCGGATCTTCAAAGGACTTGTCAAGCCGGCAAAGAATTGTTGAGTGCCAAAAGGGCCGAAGGAGAAGGCAGTTCGTTTAATTTGTTGATGGAATTGCTTAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPTEGPGWWPPSQSWKSSSNASSSSSASIQSSRTLEAGKNVSVTTINVPPAQEMHEGKSVCKYLGGQNGVTVSVVSNCGSGPGSGMGTGPGGGGGGGSSSCAESNCLEDLEDSDGEVSKIDFRGVNLRTKKKRDASGGSENECGAVGADNLEQQQPERPMSWEGELSDQEMSSHTITNQDHEETSMEGVQVCGASPGPQEQKFPIKPEPDFRSSPNLLIGSHNDGSLGLSHVQQMQQQQQQRSIDGLESTQQSDLPLLVGKLLGGYSSSTPNHSPILNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPVPSSSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPIQQPRHSHAQHHHHHHHQQQQHQQQQLSQAGSPLHLASSTSTNPHNYGHQSSEISSESGHPEDQEDCKIPTATSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLIGSSGGGMSNDKMTGGNCSPAPPGSEHHHSARHHWNHSHKIQVVPQLLQDIMDVEHLWHYNDNDRVTGGSQSSNVSGGGNGSPMPNDMPGLGVSGLVSGAGTGSLNTSSNNGNVDNRCDTNRSNNSPSSLNNEQHQQNSTSNNPTNGSNEPTTNPNGNTTQNPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00059522;
- 90% Identity
- iTF_00263524;
- 80% Identity
- iTF_00262740;