Crap005245.1
Basic Information
- Insect
- Campoletis raptor
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_948107755.1
- Location
- OX403623.1:17712817-17716385[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.1e-117 8.7e-113 376.5 34.3 1 300 29 325 29 325 0.97 2 3 0.004 68 2.5 2.7 122 171 325 374 323 378 0.91 3 3 0.038 6.5e+02 -0.7 5.1 195 237 357 398 344 402 0.55
Sequence Information
- Coding Sequence
- ATGGAGTCGACTATAGCAGGACGAAGACGTAATGCTACGAGGCATTCTGCCGAGGATCAAGCACTCGACCAGATAGCCAAAGAGGCAGAAGCAAGACTGGCTGCTAGGAGACAAGCCCGTGCTGAAGCTCGGGAAATTCGGATGCGAGAATTGGAGAGACAACAAAAAGAGGTGGAAGAGAATGCGGATAGAGTTTACGATATGTGCTCGGCAGAAGGCAGCAGAACAATGCGAGTAACGCCTGATCCAGTGCGGACGTCACGCATACTTGCAAATTCGAACAACTTTCAGTCAAGTAGAAGATCATCGGAAGATTCGTTGGAAGATGCAGGATTAAGCAGAGATCTAAGATTAGAGCTCAAAGAATTCGAGGAAAAGTTTAGAAAAGCAATGATCGCGAACGCTCAGTTGGACAACGAAAAATCATCATATGCATATCAAGTTGATTTATTAAAAGACAAACTTGAAGAGTTGGACGAAACAACCGCACAATTGAGACGCGAGCTTAGGGAAAAAAATAGAGAAGCCGAACAGCTGAAACGTGTCAGTCAACGATTAAAGGAAGATTTCGAAGTATGCAAAGCTCAATTGTTGGAGAGGGACACTCTTATTCAGGAAAATGGACTCGTCATAGTTGACGATGAGGGTAGTGGAGAAGAAGAGCATGAAATGGTGAACGGATACAGGAAAAGAGTACTAGTCAGCACAGAGGCTGCCGAGTTATTAGAAAACGCTGGTGAAGGCTCGTTAGATGTTCGATTGAGAAAGTTTGCTTCCGAAAAGAAGGAATTACAAGATGAAATTGGCCATTTGAGGTTGGAACTGGAAGAAGCAAAGAGTCGTCTGAGATCGGAAAAATCCTCAGGTTCAGTATTAGGTGGATTGTCTGATTCTGAGGACGTTCAGAGAGAAGCGAACAAATTGTTGGCAGATTATAAATTTAAATTGCAAAAAGCTGAACAAGATATGTCCACGTTGCAGGCAACTGTCGCCAGGCTAGAGAGCCAAGTTATACGTTATAAATCAGCGGCTGAGGCATCAGAAAAAGCGGAAGATGAATTGAAAGTTGAGAAGAGGAAATTGCAAAGAGAGGTTCGTGAATCGCAGGGTCGTGTTGAGGAGCTCGAAACAGCGAATTCCCACTTACAAAGACGACTGGACAAACTAAAAAATGCTAAATCCGCACTTCTTAAAGATGCGTCTCAAAGATAA
- Protein Sequence
- MESTIAGRRRNATRHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEVEENADRVYDMCSAEGSRTMRVTPDPVRTSRILANSNNFQSSRRSSEDSLEDAGLSRDLRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELDETTAQLRRELREKNREAEQLKRVSQRLKEDFEVCKAQLLERDTLIQENGLVIVDDEGSGEEEHEMVNGYRKRVLVSTEAAELLENAGEGSLDVRLRKFASEKKELQDEIGHLRLELEEAKSRLRSEKSSGSVLGGLSDSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRESQGRVEELETANSHLQRRLDKLKNAKSALLKDASQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01102050;
- 80% Identity
- -